Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020608.1 Corchorus olitorius cultivar O-4 contig20641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25649

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1802--1839
20
1.9
20
89
10
60
60
2
7
28
1.38
3678--3707
15
2.1
15
93
6
53
66
0
0
33
0.92
9319--9367
2
25.5
2
87
8
75
48
2
0
48
1.12
9318--9373
8
6.8
9
85
8
59
46
3
0
50
1.19
10888--10988
3
33.7
3
95
0
184
66
0
0
32
0.99
15465--15496
13
2.5
13
95
5
57
53
0
9
37
1.34
17059--17126
10
7.0
10
80
6
86
38
2
11
47
1.55
17045--17122
4
19.5
4
78
0
57
41
5
8
44
1.58
17042--17126
14
5.9
14
78
5
80
40
5
9
44
1.61
17255--17289
13
2.8
12
91
8
61
40
8
0
51
1.33
19278--19419
70
2.0
71
97
1
268
33
7
10
48
1.65

Tables:   1

The End!