genome.fa.s20609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020609.1 Corchorus olitorius cultivar O-4 contig20642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30732

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--237	22	9.5	22	76	9	129	35	14	8	41	1.76
117--182	23	3.0	21	84	6	78	40	16	3	39	1.64
474--567	48	2.0	46	89	6	145	34	13	11	40	1.81
1820--1963	22	6.6	21	77	8	119	38	13	10	38	1.79
1944--2005	21	3.0	20	76	7	61	25	17	12	43	1.85
3637--3964	84	3.9	84	91	2	516	42	25	10	21	1.85
3636--3965	43	7.8	43	83	8	392	42	25	10	21	1.85
5657--5691	18	1.9	18	94	0	61	34	14	0	51	1.42
7259--7298	2	19.5	2	89	5	62	47	2	2	47	1.29
7529--7572	19	2.2	20	84	4	54	54	2	40	2	1.25
7529--7565	19	1.9	19	88	0	56	54	2	40	2	1.29
10597--10665	30	2.3	30	85	2	95	43	13	5	37	1.67
11240--11577	178	1.9	178	84	4	459	36	15	13	33	1.88
12738--12788	25	2.1	25	82	10	61	47	1	1	49	1.24
13072--13241	44	3.9	43	75	9	146	35	10	17	37	1.83
13072--13241	22	7.7	22	70	10	89	35	10	17	37	1.83
13135--13302	68	2.5	64	81	6	183	36	8	16	37	1.80
13458--13879	67	6.5	65	70	11	238	38	10	14	36	1.81
13544--13702	82	1.9	83	84	1	212	40	9	16	33	1.81
13307--14009	22	32.4	21	68	15	233	38	9	15	35	1.81
14120--14155	2	18.0	2	100	0	72	50	0	0	50	1.00
14434--14458	2	12.5	2	100	0	50	0	0	52	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15390--15438	25	2.0	25	95	0	89	32	20	34	12	1.90
16165--16190	2	13.0	2	100	0	52	50	0	0	50	1.00
17168--17248	42	1.9	43	84	2	110	34	11	17	37	1.85
17168--17264	42	2.3	43	82	5	108	37	13	14	35	1.85
17938--18020	42	2.0	43	85	2	114	45	19	10	24	1.82
18079--18227	42	3.5	42	83	0	163	42	16	13	28	1.85
18191--18285	34	2.8	34	83	3	102	47	23	9	20	1.79
18959--19074	42	2.8	42	90	0	178	43	15	14	26	1.86
18969--19110	42	3.4	42	86	1	142	40	17	16	25	1.90
19088--19402	112	2.8	111	78	7	280	43	20	12	23	1.85
19251--19493	38	6.6	37	69	14	148	44	20	10	23	1.83
19308--19488	72	2.5	71	84	6	222	44	21	9	23	1.82
19308--19492	38	5.2	34	74	10	149	44	21	9	23	1.82
20289--20313	2	12.5	2	100	0	50	48	0	0	52	1.00
22534--22580	2	22.5	2	91	8	76	46	4	0	48	1.21
25154--25368	114	1.9	114	92	0	358	35	16	18	29	1.93
30212--30260	25	2.0	25	100	0	98	14	32	20	32	1.92

Tables:   1

The End!