Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020610.1 Corchorus olitorius cultivar O-4 contig20643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4269
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29


Found at i:196 original size:25 final size:25

Alignment explanation


    Indices: 165--213  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        155 CCAAATAATC

                                     
        165 TTGAGCACTCTCGCTCGGTCTCTAA
          1 TTGAGCACTCTCGCTCGGTCTCTAA

                                    
        190 TTGAGCACTCTCGCTCGGTCTCTA
          1 TTGAGCACTCTCGCTCGGTCTCTA

        214 CAAACTAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.14, C:0.33, G:0.20, T:0.33


Consensus pattern (25 bp):   
TTGAGCACTCTCGCTCGGTCTCTAA

Found at i:1097 original size:25 final size:25

Alignment explanation


    Indices: 1063--1111  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1053 CCAAACAATC

                                     
       1063 TTGAGCACTCTCGCTCGGTCTCTAA
          1 TTGAGCACTCTCGCTCGGTCTCTAA

                                    
       1088 TTGAGCACTCTCGCTCGGTCTCTA
          1 TTGAGCACTCTCGCTCGGTCTCTA

       1112 CAAACTAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.14, C:0.33, G:0.20, T:0.33


Consensus pattern (25 bp):   
TTGAGCACTCTCGCTCGGTCTCTAA
Done.