genome.fa.s20612.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020612.1 Corchorus olitorius cultivar O-4 contig20645, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166072

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13289--13332	3	14.7	3	100	0	88	65	0	0	34	0.93
15102--15177	22	3.5	22	85	0	98	27	43	22	6	1.78
25830--25866	19	2.0	19	94	5	67	32	0	0	67	0.91
27961--28406	240	1.9	240	86	3	639	36	10	16	35	1.84
30762--30803	21	2.0	22	85	4	59	4	23	0	71	1.05
30912--30998	38	2.3	37	88	5	122	19	34	36	9	1.84
34874--34905	1	32.0	1	100	0	64	100	0	0	0	0.00
37397--37430	16	2.1	16	88	0	50	2	14	0	82	0.79
43681--43761	41	2.0	41	97	0	153	38	9	19	32	1.85
53634--53713	23	3.5	22	73	13	63	51	0	2	46	1.14
55514--55594	40	2.0	40	95	0	144	40	18	13	27	1.88
55694--55728	13	2.7	13	90	0	52	34	11	45	8	1.71
56104--56132	7	4.3	7	91	8	51	27	0	44	27	1.54
57566--57633	31	2.2	32	86	5	95	35	10	7	47	1.66
59141--59182	22	1.9	22	90	0	66	64	2	7	26	1.32
68737--68797	22	2.8	21	85	9	79	39	4	11	44	1.62
68782--68840	29	2.0	29	83	6	75	42	11	10	35	1.76
68811--68881	23	3.2	21	77	15	72	35	18	8	38	1.81
68811--68894	21	3.9	21	77	14	73	34	17	7	40	1.77
69932--70222	145	2.0	145	97	1	557	35	16	18	29	1.94
71596--71652	20	2.8	20	81	0	78	38	15	26	19	1.92
73597--73654	28	2.1	28	87	6	84	27	18	8	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74673--74767	45	2.1	45	98	0	181	49	6	31	12	1.66
75052--75125	28	2.5	29	81	14	89	44	6	20	28	1.76
75052--75125	31	2.5	28	84	6	94	44	6	20	28	1.76
78489--78554	25	2.6	25	80	7	71	68	4	1	25	1.18
80160--80209	8	6.5	8	77	6	50	32	4	0	64	1.12
80160--80207	16	3.1	16	90	6	80	29	4	0	66	1.10
80160--80209	15	3.3	15	91	2	73	32	4	0	64	1.12
83095--83279	93	2.0	93	93	0	316	51	2	12	33	1.52
83172--83218	22	2.1	22	84	7	60	61	2	12	23	1.42
83315--83378	31	2.0	32	90	3	103	40	6	20	32	1.77
104134--104213	39	2.1	39	100	0	160	30	22	15	32	1.94
108511--109097	294	2.0	293	93	0	1003	24	16	16	42	1.89
109886--109943	21	2.7	22	76	12	66	36	3	13	46	1.61
127054--127083	1	30.0	1	100	0	60	0	0	0	100	0.00
128330--129824	495	3.0	496	96	0	2722	42	15	14	28	1.85
129967--130003	18	2.1	18	100	0	74	16	16	5	62	1.51
132638--132671	17	1.9	18	88	5	52	61	5	14	17	1.52
137212--137253	18	2.3	18	87	0	57	38	4	7	50	1.51
138651--138726	39	1.9	39	84	5	100	7	15	22	53	1.67
142834--143396	22	25.5	22	65	15	148	38	10	17	33	1.84
142917--142975	23	2.6	22	89	2	91	45	11	10	32	1.74
143321--143366	20	2.2	21	84	7	58	39	13	15	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144367--144490	44	2.8	44	80	4	117	42	11	12	33	1.79
144415--144552	22	6.3	22	71	9	95	44	10	12	33	1.76
144452--144552	44	2.3	44	78	10	107	43	9	13	32	1.78
144668--144720	22	2.4	22	83	0	61	41	7	20	30	1.80
144734--144909	22	8.2	22	77	5	153	34	10	17	37	1.85
144743--144909	42	3.9	45	78	7	159	34	11	15	38	1.83
144739--144884	64	2.3	62	78	11	152	34	10	17	37	1.85
156970--157024	27	2.0	27	92	0	92	36	7	23	32	1.82
159015--159079	32	2.0	32	100	0	130	43	9	18	29	1.81
159135--159171	19	1.9	19	94	0	65	29	18	13	37	1.90
160351--160613	130	2.0	131	89	0	402	49	1	9	38	1.47
161850--162018	31	5.6	31	67	16	129	34	19	19	26	1.96
161853--162016	60	2.7	60	89	0	256	34	19	19	26	1.96
162055--162223	31	5.6	31	67	13	127	26	20	20	33	1.97
162060--162219	60	2.7	60	97	0	293	25	20	20	33	1.97
162088--162188	29	3.4	29	69	15	89	25	21	20	31	1.98
163327--163366	18	2.2	18	95	0	71	10	25	30	35	1.88
163327--163378	18	2.9	18	85	0	59	9	23	28	38	1.86
164547--164603	29	2.0	28	82	3	69	28	15	14	42	1.86
164747--164840	30	3.1	30	86	10	122	42	9	13	34	1.77
164883--164907	7	3.6	7	100	0	50	0	12	0	88	0.53
164998--165236	126	1.9	125	86	4	338	52	1	10	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165124--165415	163	1.8	161	84	4	408	51	2	10	35	1.48

Tables:   1

The End!