Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020615.1 Corchorus olitorius cultivar O-4 contig20648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3508

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--164
14
4.8
13
87
12
87
43
9
10
36
1.72
807--842
6
6.2
6
87
6
56
80
2
16
0
0.83
807--860
23
2.4
22
81
12
56
77
3
16
1
1.00
807--848
17
2.5
17
96
3
77
80
2
16
0
0.81
807--859
17
3.2
16
86
5
54
77
3
16
1
1.01
981--1149
87
1.9
87
89
2
259
37
11
24
26
1.90
1908--2025
37
3.2
37
79
0
137
27
16
13
42
1.86
1904--2059
74
2.2
69
86
5
204
25
17
14
42
1.87
2156--2400
54
4.5
54
87
2
339
25
15
23
35
1.94
2156--2466
108
2.9
108
82
7
355
27
16
22
34
1.95
2156--2448
54
5.4
53
82
6
317
26
16
22
34
1.95
2156--2448
162
1.8
163
82
9
384
26
16
22
34
1.95
2519--2596
33
2.4
33
86
0
102
44
15
6
33
1.72
2708--2741
7
4.9
7
96
0
59
52
14
2
29
1.56
2732--2870
7
19.9
7
95
0
233
43
26
12
17
1.85
2862--2895
7
4.9
7
96
0
59
52
14
2
29
1.56
2944--2976
7
4.7
7
96
0
57
60
15
9
15
1.58

Tables:   1

The End!