Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020618.1 Corchorus olitorius cultivar O-4 contig20651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3932
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:994 original size:16 final size:15

Alignment explanation


    Indices: 964--1003  Score: 62
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        954 TGCAAACTCG

                           
        964 TTTTTGAAAACATTT
          1 TTTTTGAAAACATTT

                        *  
        979 TTTTTGAAAACAATT
          1 TTTTTGAAAACATTT

              *       
        994 TTCTTGAAAA
          1 TTTTTGAAAA

       1004 ACGTCTCTTG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47


Consensus pattern (15 bp):   
TTTTTGAAAACATTT

Done.