Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020624.1 Corchorus olitorius cultivar O-4 contig20657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13070

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1958--2004
3
15.7
3
95
0
85
65
0
31
2
1.04
2305--2520
50
4.3
49
80
5
218
42
5
17
35
1.72
2368--2405
20
2.0
20
89
5
60
44
5
13
36
1.66
2323--2512
101
1.9
100
84
5
258
41
5
16
35
1.73
2829--2878
25
2.0
25
88
7
75
16
14
28
42
1.86
2811--3013
97
2.1
97
88
1
300
12
14
20
52
1.74
2841--3025
97
1.9
97
98
0
361
11
16
16
55
1.70
7176--7340
83
2.0
82
94
3
287
44
17
6
31
1.73
7412--7718
50
6.1
50
80
6
307
43
4
14
37
1.65
7551--7600
20
2.5
20
87
6
66
44
2
16
38
1.59
7542--7630
30
3.3
30
66
28
90
42
3
15
38
1.64
7414--7717
101
3.0
98
79
8
317
43
4
14
37
1.66
10130--10209
42
1.9
42
89
0
124
11
15
27
46
1.79

Tables:   1

The End!