Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020626.1 Corchorus olitorius cultivar O-4 contig20659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39


Found at i:398 original size:24 final size:24

Alignment explanation


    Indices: 367--413  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        357 AACAAAATTG

                                    
        367 CTAAGAATGTAAGGTTATTAAATA
          1 CTAAGAATGTAAGGTTATTAAATA

                                   
        391 CTAAGAATGTAAGGTTATTAAAT
          1 CTAAGAATGTAAGGTTATTAAAT

        414 TAGTTGAAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.45, C:0.04, G:0.17, T:0.34


Consensus pattern (24 bp):   
CTAAGAATGTAAGGTTATTAAATA

Found at i:830 original size:36 final size:36

Alignment explanation


    Indices: 783--852  Score: 131
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        773 GAAATTTTGG

                         *                      
        783 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAATA

                                              
        819 AGAAATATGATAACCAAAATTACAAAAAATGTAA
          1 AGAAATATGATAACCAAAATTACAAAAAATGTAA

        853 GGTTATTGAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   33  1.00

ACGTcount: A:0.61, C:0.07, G:0.09, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATTACAAAAAATGTAATA
Done.