Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020628.1 Corchorus olitorius cultivar O-4 contig20661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69642

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--48
2
24.0
2
100
0
96
50
0
0
50
1.00
4514--4561
2
24.5
2
95
4
89
50
0
0
50
1.00
7490--7571
40
2.0
40
97
0
155
29
21
17
31
1.96
10967--10994
2
14.0
2
100
0
56
50
0
0
50
1.00
14171--14275
30
3.5
30
98
0
201
40
8
40
10
1.70
34430--34497
30
2.3
30
100
0
136
19
30
20
29
1.97
39743--39806
21
3.2
20
80
8
67
37
12
18
31
1.88
55816--55855
19
2.1
19
100
0
80
42
0
17
40
1.49
57313--57881
22
25.4
22
69
11
181
35
16
11
35
1.85
57467--57539
23
3.3
23
77
12
82
41
16
12
30
1.85
59618--60114
22
22.4
22
70
12
185
35
17
11
35
1.86
64545--64603
2
30.0
2
74
16
52
45
3
0
50
1.18
64526--64603
41
1.9
41
97
0
147
44
6
0
48
1.28
64553--64595
16
2.6
17
85
7
70
44
4
0
51
1.22
65766--65829
21
3.1
21
71
8
69
39
12
18
29
1.88
67550--67617
22
3.3
22
69
23
74
23
30
13
32
1.93

Tables:   1

The End!