Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020636.1 Corchorus olitorius cultivar O-4 contig20669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19697

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
966--997
8
4.1
8
92
8
57
0
9
0
90
0.45
969--997
15
1.9
15
100
0
58
0
6
0
93
0.36
4379--4565
4
47.0
4
67
17
61
63
0
10
25
1.30
4462--4565
27
4.1
27
72
21
93
63
0
7
27
1.28
4453--4563
46
2.4
46
92
1
188
62
0
9
27
1.31
13293--13328
2
18.0
2
100
0
72
50
0
0
50
1.00
17049--17092
22
2.0
22
82
8
54
43
11
2
43
1.53
17373--17488
57
2.0
57
93
0
196
31
3
26
38
1.73
17625--17693
25
2.8
24
87
12
97
15
13
24
46
1.82
18595--18636
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!