Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020637.1 Corchorus olitorius cultivar O-4 contig20670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27583

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2899--2971
21
3.4
21
75
1
65
15
20
45
19
1.86
3248--3298
21
2.4
21
100
0
102
13
27
45
13
1.82
6157--6208
23
2.2
25
93
6
90
53
9
9
26
1.64
6155--6223
25
2.7
26
80
17
90
47
13
10
28
1.74
6140--6229
25
3.4
25
71
11
65
51
14
10
24
1.73
6580--6619
15
2.6
16
88
8
64
65
12
7
15
1.47
7379--7404
11
2.4
11
100
0
52
69
7
15
7
1.35
9360--9428
25
2.8
24
93
4
120
15
13
27
43
1.84
9877--9962
23
3.9
22
86
10
113
36
19
8
36
1.82
10098--10465
22
16.6
22
68
14
193
33
15
10
40
1.81
10530--10618
44
2.0
44
84
8
117
37
15
10
37
1.82
10549--10681
22
6.0
22
71
11
76
36
20
9
33
1.85
10844--10882
20
2.0
20
85
10
53
64
2
5
28
1.28
13541--13673
69
1.9
69
89
6
207
24
12
15
48
1.78
19340--19375
16
2.1
18
90
10
58
36
8
0
55
1.30
19849--19999
21
7.4
21
71
14
77
33
8
8
49
1.64
19924--20067
20
7.3
18
69
16
58
36
7
5
50
1.55
19981--20083
42
2.5
43
78
12
108
38
7
3
49
1.50
20450--20494
21
2.2
20
84
4
54
37
8
11
42
1.72
21122--21161
22
2.0
20
85
14
55
47
20
0
32
1.50
21434--21688
123
2.1
123
97
1
483
38
13
9
39
1.77
23283--23316
12
2.8
12
90
0
50
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23981--24058
38
2.1
38
92
0
129
56
0
12
30
1.37
24450--24482
17
1.9
18
88
11
52
60
15
18
6
1.54

Tables:   1

The End!