Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020638.1 Corchorus olitorius cultivar O-4 contig20671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10425
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31


Found at i:443 original size:16 final size:15

Alignment explanation


    Indices: 406--436  Score: 53
    Period size: 16  Copynumber: 2.0  Consensus size: 15

        396 ACAAAAATGC

                           
        406 AAAAAGAAGAAAACA
          1 AAAAAGAAGAAAACA

                            
        421 AAGAAAGAAGAAAACA
          1 AA-AAAGAAGAAAACA

        437 CCAAAAGCAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    2  0.13
  16   13  0.87

ACGTcount: A:0.77, C:0.06, G:0.16, T:0.00


Consensus pattern (15 bp):   
AAAAAGAAGAAAACA

Found at i:2775 original size:18 final size:19

Alignment explanation


    Indices: 2735--2774  Score: 55
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2725 ATAGCTTAGC

                      *        
       2735 AAAGCCCAATGAGAAATTA
          1 AAAGCCCAATCAGAAATTA

                                
       2754 AAAGCCCAA-CAGAAAGTTA
          1 AAAGCCCAATCAGAAA-TTA

              
       2773 AA
          1 AA

       2775 GTCTACTCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  18    5  0.26
  19   14  0.74

ACGTcount: A:0.55, C:0.17, G:0.15, T:0.12


Consensus pattern (19 bp):   
AAAGCCCAATCAGAAATTA
Done.