Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020648.1 Corchorus olitorius cultivar O-4 contig20681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7230

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
313--506
81
2.4
81
81
3
221
29
17
19
33
1.94
400--645
134
1.8
135
85
4
354
32
18
17
32
1.94
156--726
216
2.7
215
80
4
632
30
19
17
33
1.94
601--900
164
1.8
163
82
2
386
32
21
15
31
1.94
520--1049
81
6.5
80
72
8
331
32
19
16
31
1.94
521--977
245
1.9
243
81
4
553
32
19
16
31
1.94
1002--1109
54
2.0
54
83
3
137
34
24
7
34
1.83
1089--1755
81
8.2
81
73
8
275
31
17
19
32
1.94
1056--1753
162
4.3
161
77
5
570
31
17
18
32
1.94
1192--1753
241
2.3
243
77
7
545
31
16
19
32
1.94
1774--2303
81
6.5
81
78
6
476
28
18
21
31
1.97
1879--2301
168
2.6
161
83
3
504
26
19
21
31
1.97
2253--2356
54
1.9
54
86
0
145
28
26
6
37
1.82
2172--2433
135
1.9
135
82
0
326
28
20
15
34
1.94
2313--2497
81
2.3
81
81
0
208
30
17
20
31
1.96
2085--2503
216
1.9
219
82
4
533
29
19
19
31
1.96
3552--3585
16
2.1
16
88
0
50
14
5
11
67
1.39
4373--4407
18
1.9
18
94
0
61
42
17
11
28
1.83

Tables:   1

The End!