Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020649.1 Corchorus olitorius cultivar O-4 contig20682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3346
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:494 original size:15 final size:16

Alignment explanation


    Indices: 463--496  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        453 TTGCTTTGTT

                            
        463 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
        479 TTGTTTTCTA-TTTAA
          1 TTGTTTTCTAGTTTAA

               
        494 TTG
          1 TTG

        497 CTTTGTTTCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  15    8  0.44
  16   10  0.56

ACGTcount: A:0.18, C:0.06, G:0.12, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.