Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020652.1 Corchorus olitorius cultivar O-4 contig20685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27779

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2941--2974
16
2.2
16
94
5
61
17
5
11
64
1.45
7156--7594
81
5.5
81
75
5
394
29
19
18
32
1.96
7642--7676
14
2.4
15
90
4
54
25
0
48
25
1.51
8072--8104
2
17.0
2
93
6
59
51
0
0
48
1.00
8074--8103
15
2.0
15
100
0
60
53
0
0
46
1.00
8072--8104
17
1.9
17
100
0
66
51
0
0
48
1.00
8396--8813
161
2.6
159
82
4
457
30
19
18
31
1.96
8396--8743
80
4.3
81
80
5
321
30
20
19
30
1.97
8396--8813
81
5.2
80
80
7
391
30
19
18
31
1.96
8695--8947
134
1.9
134
85
4
348
31
19
14
34
1.92
8817--9270
81
5.6
81
83
2
531
29
19
18
32
1.96
8602--9482
215
4.0
215
68
15
500
30
20
17
31
1.96
8521--9093
296
1.9
296
82
2
722
30
19
17
31
1.96
8837--9273
162
2.7
162
85
2
587
29
19
18
31
1.96
8441--9566
376
3.0
371
81
6
1161
29
20
18
31
1.96
8398--9645
457
2.7
455
83
3
1531
29
19
18
31
1.96
9160--9404
134
1.8
133
84
5
332
28
23
15
32
1.95
9278--9645
81
4.6
81
85
1
497
29
19
19
31
1.96
9278--9644
162
2.3
161
90
2
567
29
19
19
31
1.96
9901--9951
19
2.7
19
77
14
61
47
0
1
50
1.12
25369--25470
51
2.0
50
80
12
111
23
21
13
41
1.89

Tables:   1

The End!