Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020657.1 Corchorus olitorius cultivar O-4 contig20690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7841

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1542--1586
2
22.5
2
90
0
63
42
0
6
51
1.28
1544--1586
16
2.7
16
96
0
77
41
0
6
51
1.29
1542--1586
18
2.5
18
96
0
81
42
0
6
51
1.28
5826--5963
71
2.0
70
85
7
190
24
23
15
36
1.94
6039--6303
38
6.9
38
78
10
243
26
17
16
39
1.91
6057--6303
39
6.4
39
76
9
238
26
17
16
39
1.91
6034--6303
116
2.3
114
85
4
344
25
17
16
39
1.91
6057--6303
77
3.2
76
78
5
273
26
17
16
39
1.91
6310--6449
39
3.6
38
88
4
192
22
19
19
39
1.93

Tables:   1

The End!