Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020658.1 Corchorus olitorius cultivar O-4 contig20691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2664
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25


Found at i:1888 original size:16 final size:15

Alignment explanation


    Indices: 1852--1893  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1842 ACAGAGATTG

                   *       
       1852 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                         * 
       1867 ACAGAAAACAATTTA
          1 ACAGAAAACAATTAA

                        
       1882 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1894 AGCAAAGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.