Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020659.1 Corchorus olitorius cultivar O-4 contig20692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46507

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3085--3133
24
2.0
25
92
4
82
28
10
18
42
1.83
6088--6133
24
2.0
24
86
4
67
10
19
17
52
1.74
7462--7505
21
2.1
21
91
0
70
40
22
6
29
1.80
8883--8929
17
2.6
18
87
12
62
12
36
10
40
1.78
11501--11755
130
2.0
124
88
7
379
38
10
1
49
1.50
11741--11779
14
2.9
13
80
3
51
41
2
2
53
1.28
13590--13630
21
1.9
22
85
5
57
9
17
29
43
1.80
15258--15309
22
2.4
22
93
3
88
50
5
9
34
1.59
15597--15644
23
2.2
22
85
10
64
50
10
10
29
1.70
15612--15655
20
2.1
21
84
12
56
50
11
9
29
1.69
15718--15895
86
2.1
86
94
2
313
49
6
11
33
1.63
15924--15962
20
1.9
20
84
5
51
53
5
5
35
1.45
15930--15978
21
2.4
19
80
12
53
51
6
8
34
1.57
16834--16864
16
1.9
16
93
0
53
54
3
12
29
1.53
23229--23263
3
11.7
3
100
0
70
65
0
0
34
0.93
24023--24097
38
2.0
38
94
0
132
10
37
41
10
1.75
25197--25231
16
2.1
17
89
5
54
71
0
0
28
0.86
25194--25234
19
2.1
20
86
4
57
73
0
0
26
0.84
25199--25235
3
13.0
3
83
11
51
67
0
0
32
0.91
25840--25914
28
2.7
28
78
12
73
36
17
9
37
1.82
26391--26434
14
3.4
12
84
9
52
31
0
11
56
1.35
31185--31334
58
2.6
58
95
1
273
40
7
13
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31531--31587
21
2.7
21
75
0
60
47
10
10
31
1.72
32290--32314
13
1.9
13
100
0
50
44
0
0
56
0.99
32488--33284
276
3.0
266
84
5
1009
34
11
18
35
1.88
41797--41826
3
10.0
3
100
0
60
33
0
0
66
0.92
43357--43391
3
11.7
3
100
0
70
34
0
0
65
0.93
44463--44494
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!