Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020661.1 Corchorus olitorius cultivar O-4 contig20694, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67618

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
995--1037
21
2.1
20
86
4
59
81
0
16
2
0.79
3152--3416
131
2.0
131
98
0
512
43
5
10
40
1.62
10436--10506
36
2.0
36
94
0
124
40
19
25
14
1.89
12893--13001
49
2.3
48
85
3
139
44
11
5
37
1.65
18763--18799
2
18.5
2
94
0
65
51
48
0
0
1.00
27545--27605
27
2.3
27
82
0
68
29
22
13
34
1.92
36920--36950
16
1.9
16
93
0
53
22
6
0
70
1.09
37908--38378
235
2.0
234
84
9
612
40
10
9
40
1.72
42194--42232
18
2.2
18
100
0
78
41
10
0
48
1.37
42201--42240
18
2.2
18
86
0
53
45
10
0
45
1.37
42428--42462
18
1.9
18
88
0
52
40
0
0
60
0.97
42548--42577
16
1.9
16
93
6
53
76
0
13
10
1.01
55390--55416
14
1.9
14
100
0
54
48
14
7
29
1.71
63086--63119
16
2.2
16
89
5
52
17
29
17
35
1.93

Tables:   1

The End!