Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020665.1 Corchorus olitorius cultivar O-4 contig20698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93206

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11781--11814
17
2.0
17
94
0
59
38
20
11
29
1.88
11776--11821
17
2.4
19
75
20
51
32
26
10
30
1.90
14456--14524
30
2.3
31
82
7
79
28
27
15
27
1.96
19095--19454
122
2.9
123
83
2
425
30
15
17
36
1.91
19092--19486
125
3.2
125
82
2
472
31
15
16
36
1.90
24224--24256
12
2.8
12
82
17
50
75
0
0
24
0.80
24251--24318
23
2.9
23
80
2
73
75
0
22
2
0.94
24251--24318
12
5.8
12
74
10
50
75
0
22
2
0.94
27290--27327
18
2.1
18
85
9
51
42
23
0
34
1.55
27640--27877
126
1.9
127
96
0
442
34
15
19
31
1.93
36035--36061
2
13.5
2
100
0
54
51
0
0
48
1.00
37768--37802
14
2.4
15
85
9
54
34
14
22
28
1.93
57769--57842
37
2.0
37
94
2
132
33
12
22
31
1.91
62292--62501
109
1.9
109
96
0
384
44
12
10
32
1.77
64187--64503
40
8.0
40
86
4
410
34
15
17
32
1.92
64514--64554
18
2.3
18
86
0
55
31
2
12
53
1.51
66990--67139
75
2.0
75
82
3
185
16
30
27
25
1.97
67162--67207
25
1.9
24
82
8
58
15
28
10
45
1.79
76793--76859
32
2.1
32
94
0
116
23
11
5
58
1.56
78696--78776
42
1.9
42
92
5
137
27
8
44
19
1.80
80875--80902
1
28.0
1
100
0
56
0
0
100
0
0.00
81532--81561
14
2.1
14
93
0
51
43
13
13
30
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83435--83500
23
2.8
24
78
15
75
48
3
1
46
1.26
83426--83502
25
3.1
24
76
14
68
50
2
1
45
1.23
85661--85692
16
1.9
17
93
6
57
9
9
0
81
0.88
91085--91154
37
1.9
37
88
11
110
11
44
32
11
1.76
92902--92926
11
2.3
11
100
0
50
8
0
28
64
1.22

Tables:   1

The End!