Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020668.1 Corchorus olitorius cultivar O-4 contig20701, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5438
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:2900 original size:15 final size:16

Alignment explanation


    Indices: 2880--2909  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2870 TGTAAGTTTA

                            
       2880 TCAAAA-ATCAATTTT
          1 TCAAAAGATCAATTTT

                           
       2895 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

       2910 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37


Consensus pattern (16 bp):   
TCAAAAGATCAATTTT

Done.