Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020677.1 Corchorus olitorius cultivar O-4 contig20710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32080

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
171--215
15
3.1
14
90
6
63
55
0
0
44
0.99
176--215
5
8.0
5
89
10
64
57
0
0
42
0.98
2268--2388
60
2.0
60
87
3
172
37
11
0
51
1.39
5735--5783
15
3.2
15
72
16
55
10
16
28
44
1.80
7393--7648
129
2.0
126
84
6
338
41
10
19
28
1.85
7750--7781
2
16.0
2
100
0
64
50
0
0
50
1.00
12219--12426
65
3.2
65
73
6
188
41
8
13
36
1.75
12219--12813
22
27.5
22
71
13
296
39
9
15
36
1.79
12645--12716
24
3.0
23
88
9
101
37
6
18
37
1.77
12891--12939
22
2.2
22
88
0
71
51
4
14
30
1.61
14249--14286
12
3.2
13
85
14
55
55
0
0
44
0.99
14253--14286
10
3.3
11
88
12
54
55
0
0
44
0.99
18094--18196
47
2.3
46
86
6
140
33
2
7
56
1.43
18940--18992
26
2.0
26
100
0
106
32
22
7
37
1.82
20023--20266
119
2.1
117
89
4
375
52
17
9
20
1.72
21344--21368
13
1.9
13
100
0
50
40
0
8
52
1.31
22074--22107
15
2.2
16
89
5
52
61
0
0
38
0.96
27598--27698
49
2.1
49
98
0
193
43
17
12
25
1.85
27700--27733
17
2.0
17
100
0
68
41
23
11
23
1.87
29571--29620
25
2.0
25
88
7
75
54
22
10
14
1.69

Tables:   1

The End!