Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020678.1 Corchorus olitorius cultivar O-4 contig20711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51383

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7051--7130
29
2.7
30
86
3
99
27
18
12
41
1.87
7254--7350
31
3.1
31
93
1
158
41
11
15
31
1.83
7788--8027
126
1.9
126
83
3
313
34
10
1
52
1.46
7960--8167
103
2.0
105
96
2
386
33
11
3
51
1.55
8283--8312
15
2.0
15
93
0
51
43
20
6
30
1.77
8503--8576
29
2.5
30
88
4
105
43
13
18
24
1.86
18332--18366
18
1.9
18
88
0
52
37
0
25
37
1.57
18693--18729
17
2.2
18
85
9
51
8
10
10
70
1.35
18923--19171
113
2.2
114
82
6
301
30
16
14
39
1.87
32843--33040
100
2.0
100
90
0
315
16
36
14
33
1.88
34818--34885
3
22.7
3
93
0
118
63
0
2
33
1.10
37755--37954
100
2.0
100
90
0
310
16
35
14
34
1.89
40160--40211
21
2.5
20
84
3
59
53
1
3
40
1.30
41894--42095
100
2.0
100
88
1
298
16
33
13
35
1.89
43032--43085
23
2.3
23
87
6
74
68
1
11
18
1.28
43422--43447
3
8.7
3
100
0
52
0
30
0
69
0.89
44500--44555
16
3.6
16
87
2
78
5
16
41
37
1.71
44546--44609
6
11.0
6
79
12
71
1
20
48
29
1.59
44548--44598
17
3.0
17
77
5
59
1
17
49
31
1.58
44819--44859
14
2.7
16
78
21
52
43
9
2
43
1.50

Tables:   1

The End!