Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020681.1 Corchorus olitorius cultivar O-4 contig20714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48400

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
379--410
16
2.0
16
100
0
64
25
12
12
50
1.75
2355--2384
2
15.0
2
100
0
60
50
0
0
50
1.00
3100--3167
30
2.2
30
92
2
109
35
10
30
23
1.88
9756--9815
16
3.8
16
86
0
84
40
36
16
6
1.75
9822--9854
17
1.9
17
93
0
57
21
51
24
3
1.62
9804--9854
12
4.5
11
76
11
50
25
49
23
1
1.61
9804--9856
23
2.4
22
80
3
70
26
49
22
1
1.60
10038--10072
2
17.5
2
88
11
54
51
0
2
45
1.16
10310--10381
31
2.3
31
75
17
78
26
2
9
61
1.41
10794--10853
17
3.6
17
77
8
61
31
48
18
1
1.58
10797--10883
32
2.7
33
75
21
85
31
50
16
2
1.57
10797--10857
12
5.5
11
74
14
54
32
49
16
1
1.56
18696--18818
58
2.1
58
98
1
239
25
18
22
33
1.97
19247--19282
18
2.0
18
100
0
72
22
27
27
22
1.99
19540--20217
340
2.0
337
88
2
1018
27
15
18
38
1.91
21875--21914
20
2.0
21
95
5
73
52
15
5
27
1.63
28665--28701
13
2.9
13
85
14
51
0
10
0
89
0.49
28665--28698
9
3.7
9
92
7
59
0
11
0
88
0.52
28665--28699
10
3.6
10
88
3
54
0
11
0
88
0.51
34132--34183
17
3.3
15
76
12
50
59
0
1
38
1.08
34983--35026
14
2.9
16
80
13
65
22
6
29
40
1.80
44085--44154
36
1.9
36
91
0
113
21
10
8
60
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44208--44347
72
1.9
72
97
0
262
45
9
12
32
1.74
45878--46286
202
2.0
200
94
0
719
44
8
10
36
1.70
46325--46374
26
2.0
25
92
7
84
56
8
6
30
1.52
46365--46445
39
2.0
40
92
2
137
37
3
8
50
1.51

Tables:   1

The End!