Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020683.1 Corchorus olitorius cultivar O-4 contig20716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1603
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:1025 original size:9 final size:9

Alignment explanation


    Indices: 1011--1036  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       1001 TCAACAACTT

                     
       1011 ATTATTATA
          1 ATTATTATA

                     
       1020 ATTATTATA
          1 ATTATTATA

                    
       1029 ATTATTAT
          1 ATTATTAT

       1037 TAGTTATATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (9 bp):   
ATTATTATA

Found at i:1156 original size:27 final size:27

Alignment explanation


    Indices: 1125--1205  Score: 117
    Period size: 30  Copynumber: 2.9  Consensus size: 27

       1115 TAATTTAGAT

                                       
       1125 TTATTATTATTATAATAATTATTAAAC
          1 TTATTATTATTATAATAATTATTAAAC

                            *             
       1152 TTATTATTAGTGGTATTATAATTATTAAAC
          1 TTATTATTA-T--TATAATAATTATTAAAC

                      *             
       1182 TTATTATTATAATAATAATTATTA
          1 TTATTATTATTATAATAATTATTA

       1206 TTAGTGGTAT


Statistics
Matches: 48,  Mismatches: 3, Indels: 6
        0.84            0.05        0.11

Matches are distributed among these distances:
  27   21  0.44
  28    1  0.02
  29    1  0.02
  30   25  0.52

ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52


Consensus pattern (27 bp):   
TTATTATTATTATAATAATTATTAAAC

Done.