Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020685.1 Corchorus olitorius cultivar O-4 contig20718, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29479

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12455--12506
23
2.3
22
83
3
68
67
9
7
15
1.41
16825--17000
93
1.9
93
84
0
235
32
21
17
28
1.96
16926--17067
67
2.1
67
92
2
232
34
23
16
25
1.95
16960--17068
36
3.2
36
71
26
126
35
23
16
23
1.95
19193--19253
30
2.0
30
87
6
88
37
16
6
39
1.75
20034--20089
21
2.7
21
85
0
76
46
25
10
17
1.80
20006--20236
78
3.0
77
85
2
309
41
22
10
25
1.86
20112--20167
21
2.6
22
77
5
62
44
21
10
23
1.83
20190--20260
21
3.4
21
90
5
108
39
25
11
23
1.88
23327--23367
19
2.2
19
86
8
57
53
2
7
36
1.42
25871--25920
21
2.3
21
89
3
73
40
20
12
28
1.87

Tables:   1

The End!