genome.fa.s20694.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020694.1 Corchorus olitorius cultivar O-4 contig20727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169186

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917--950	14	2.4	14	95	0	59	23	8	0	67	1.18
5827--5870	22	2.1	22	87	8	65	56	2	29	11	1.46
12033--12585	37	14.9	37	76	4	346	41	16	18	23	1.90
12033--12585	74	7.5	74	76	5	463	41	16	18	23	1.90
12041--12580	111	4.9	110	77	2	485	41	16	18	23	1.90
13530--13574	17	2.6	17	82	0	54	6	15	4	73	1.21
13543--13599	17	3.2	17	81	13	69	1	15	1	80	0.87
14305--14343	14	2.8	14	88	0	51	35	7	10	46	1.67
16956--16990	17	2.1	17	88	0	52	51	17	11	20	1.75
26386--26462	40	1.9	40	97	0	145	41	19	2	36	1.65
27963--27992	1	30.0	1	100	0	60	0	0	0	100	0.00
31949--32012	31	2.1	31	91	5	103	17	6	15	60	1.54
32650--32689	21	1.9	21	100	0	80	22	15	22	40	1.91
33177--33241	31	2.1	31	91	5	105	16	6	15	61	1.53
36044--36068	1	25.0	1	100	0	50	0	0	0	100	0.00
37428--37482	2	27.5	2	96	0	101	50	0	47	1	1.11
38892--38927	17	2.1	17	90	10	56	2	16	0	80	0.83
40783--40823	21	2.0	21	85	0	55	36	7	0	56	1.27
49972--50050	31	2.7	30	79	14	92	32	24	6	36	1.80
52960--53026	31	2.2	31	86	0	89	47	5	19	26	1.72
53151--53211	29	2.1	29	84	0	77	47	8	21	22	1.77
53272--53296	13	1.9	13	100	0	50	60	8	8	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53484--53535	26	2.0	26	88	7	79	42	0	44	13	1.44
70120--70201	45	1.9	43	87	9	123	39	21	2	36	1.67
70232--70282	17	3.1	16	86	8	66	35	21	21	21	1.96
72488--72584	45	2.2	45	86	1	133	37	21	4	37	1.73
79507--79543	2	18.5	2	100	0	74	51	0	0	48	1.00
80021--80048	6	4.7	6	100	0	56	14	14	35	35	1.86
84637--84708	32	2.2	33	81	13	80	45	20	13	19	1.84
85821--85857	19	2.0	19	89	5	58	35	0	0	64	0.94
87302--87372	31	2.3	31	100	0	142	30	18	42	8	1.80
87623--87665	22	2.0	22	86	9	61	30	11	18	39	1.86
92157--92199	22	2.0	22	86	9	61	30	11	18	39	1.86
95927--95964	11	3.5	11	89	10	51	39	0	2	57	1.12
100632--100669	19	2.0	20	94	5	69	21	0	23	55	1.44
104608--104643	15	2.5	15	86	4	56	47	8	19	25	1.77
105246--105381	69	2.0	68	89	4	211	35	11	22	30	1.90
112017--112043	14	1.9	14	100	0	54	59	3	7	29	1.42
113151--113183	17	1.9	17	100	0	66	18	12	12	57	1.64
115284--115498	107	2.0	107	93	0	367	40	11	6	42	1.66
117578--118100	276	1.9	272	89	2	805	33	12	18	35	1.88
121446--121525	42	1.9	42	82	10	101	33	8	27	30	1.87
121711--121888	91	1.9	92	91	1	295	30	14	8	46	1.75
123042--123091	2	27.0	2	84	15	72	54	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123042--123089	13	3.9	13	89	10	75	54	0	0	45	0.99
124513--124637	22	5.7	22	76	14	89	38	19	10	32	1.85
124513--124637	44	2.8	42	77	11	117	38	19	10	32	1.85
124514--124638	66	1.9	67	86	5	182	38	19	9	32	1.84
124535--125050	22	23.4	22	67	12	159	34	16	11	37	1.86
126358--126706	180	1.9	180	97	0	653	36	16	11	35	1.85
126683--126729	23	2.0	23	100	0	94	48	8	21	21	1.76
138198--138233	19	1.9	18	88	5	54	27	22	8	41	1.82
139081--139115	18	2.0	18	88	5	54	37	11	5	45	1.64
159266--159303	14	2.6	15	79	4	51	31	7	15	44	1.75
161285--161389	31	3.4	31	95	0	183	19	19	31	30	1.96
164366--164414	21	2.3	21	85	0	62	10	51	26	12	1.71

Tables:   1

The End!