Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020697.1 Corchorus olitorius cultivar O-4 contig20730, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2444
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38


Found at i:728 original size:31 final size:31

Alignment explanation


    Indices: 652--717  Score: 105
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        642 ACTAAATACT

                      *                     
        652 AAAAAAATTCTCTTATATTTTTCTTTTGGGAC
          1 AAAAAAA-TCCCTTATATTTTTCTTTTGGGAC

                           *               
        684 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC
          1 AAAAAAATCCCTTATATTTTTCTTTTGGGAC

               
        715 AAA
          1 AAA

        718 TCAGTCCCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  31   25  0.78
  32    7  0.22

ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42


Consensus pattern (31 bp):   
AAAAAAATCCCTTATATTTTTCTTTTGGGAC
Done.