Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000207.1 Corchorus olitorius cultivar O-4 contig00207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30


Found at i:694 original size:25 final size:25

Alignment explanation


    Indices: 641--728  Score: 115
    Period size: 26  Copynumber: 3.5  Consensus size: 25

        631 CCCATTGACC

                                 *    
        641 AAAAACAGAAAGTTAGATACTGATAA
          1 AAAAACAGAAAGTTAGATACTTAT-A

                              *      
        667 AAAAACAGAAAGTTAGATGCTTATA
          1 AAAAACAGAAAGTTAGATACTTATA

                           * *    *  
        692 AAAAACAGAAAGTTATAAACTTGT-
          1 AAAAACAGAAAGTTAGATACTTATA

                         
        716 AAAAACAGAAAGT
          1 AAAAACAGAAAGT

        729 ATGAGTACCT


Statistics
Matches: 56,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  24   13  0.23
  25   21  0.38
  26   22  0.39

ACGTcount: A:0.57, C:0.08, G:0.15, T:0.20


Consensus pattern (25 bp):   
AAAAACAGAAAGTTAGATACTTATA
Done.