Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020700.1 Corchorus olitorius cultivar O-4 contig20733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39896

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2326--2375
25
2.0
25
88
0
73
22
20
22
36
1.96
6138--6238
49
2.0
50
90
5
159
24
18
25
30
1.98
7177--7206
1
30.0
1
100
0
60
100
0
0
0
0.00
8547--8575
1
29.0
1
100
0
58
100
0
0
0
0.00
12136--12179
18
2.4
18
96
0
79
20
27
18
34
1.96
14272--14314
9
4.7
9
91
2
68
34
2
18
44
1.63
25537--25575
6
6.5
6
100
0
78
48
17
33
0
1.48
26736--26892
71
2.2
72
76
7
167
26
16
17
38
1.91
26831--27045
71
3.2
71
63
21
179
25
24
14
36
1.93
26828--27075
131
1.9
131
94
0
433
25
24
14
36
1.93
28897--28938
7
6.0
7
100
0
84
14
0
0
85
0.59
29484--30610
439
2.6
438
81
6
1203
43
13
14
29
1.83
31498--31532
2
17.5
2
93
0
61
0
54
0
45
0.99
32163--32195
2
16.5
2
100
0
66
48
0
0
51
1.00
34398--34491
44
2.1
47
92
6
158
37
0
3
59
1.13
37710--37741
15
2.1
15
94
0
55
0
15
40
43
1.47
39016--39066
24
2.1
24
96
0
93
33
3
9
52
1.53
39670--39704
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!