Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020702.1 Corchorus olitorius cultivar O-4 contig20735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29740

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
904--973
36
1.9
36
88
5
106
21
10
7
61
1.51
2015--2093
42
1.9
41
89
2
122
37
2
8
50
1.47
3533--3568
18
1.9
18
88
5
54
38
2
22
36
1.69
6326--6355
12
2.4
12
94
5
51
50
20
23
6
1.71
10695--10893
77
2.6
77
95
0
362
25
20
15
38
1.92
11368--11413
23
2.0
24
86
4
67
26
8
36
28
1.86
11553--11734
64
2.8
64
89
1
258
26
23
22
27
2.00
11748--11914
87
1.9
87
83
0
217
20
23
24
31
1.98
11821--12082
140
1.9
140
90
0
416
19
22
25
32
1.98
12203--12529
77
4.2
77
89
3
487
30
20
11
36
1.89
12203--12625
154
2.8
149
85
7
526
29
21
11
36
1.89
12461--12591
63
2.1
62
89
1
199
29
21
12
35
1.91
14960--15238
118
2.4
119
95
0
506
29
20
15
34
1.94
16322--16346
2
12.5
2
100
0
50
52
0
48
0
1.00
23089--23128
21
1.9
21
89
0
62
15
30
15
40
1.87
23095--23139
21
2.1
21
83
0
54
22
28
13
35
1.92
23636--23674
11
3.5
11
82
0
51
12
33
30
23
1.92

Tables:   1

The End!