Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020703.1 Corchorus olitorius cultivar O-4 contig20736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74584

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7745--7806
30
2.1
30
96
0
115
27
16
17
38
1.91
10380--10433
21
2.6
20
75
18
56
18
3
7
70
1.26
10383--10433
24
2.1
25
82
10
61
17
3
7
70
1.27
10584--10615
11
2.9
11
90
0
55
0
3
15
81
0.82
15660--15921
131
2.0
132
97
0
499
42
11
14
30
1.82
24179--24210
6
5.3
6
92
0
55
65
31
3
0
1.08
26477--26511
15
2.3
15
90
0
52
0
28
14
57
1.38
33157--33189
2
17.0
2
93
6
59
51
0
0
48
1.00
33462--33541
40
2.0
40
97
0
151
41
15
12
31
1.84
34722--34757
13
2.8
13
86
0
54
16
41
8
33
1.78
34821--34882
12
5.0
12
76
7
70
30
8
45
16
1.76
34821--34882
25
2.5
25
100
0
124
30
8
45
16
1.76
34832--34876
13
3.5
13
81
6
65
31
6
46
15
1.72
43675--43704
15
2.0
15
93
0
51
16
33
23
26
1.96
53610--53660
1
51.0
1
100
0
102
0
0
0
100
0.00
55943--55981
14
2.9
13
80
3
51
53
2
2
41
1.28
55967--56224
124
2.0
128
88
6
380
48
1
10
39
1.45
56430--56466
19
1.9
19
88
0
56
29
10
18
40
1.85
59749--59773
11
2.3
11
100
0
50
36
0
8
56
1.29
61186--61240
19
2.8
20
81
10
62
60
3
21
14
1.50
64096--64229
21
6.4
21
94
1
200
29
17
26
26
1.97
67804--67939
68
2.0
68
92
0
227
45
16
11
26
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68319--68353
13
2.7
13
95
0
61
5
2
88
2
0.68
69003--69049
24
2.0
24
95
0
85
21
25
17
36
1.94
73798--73833
19
1.9
18
88
5
54
27
22
8
41
1.82

Tables:   1

The End!