Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020710.1 Corchorus olitorius cultivar O-4 contig20743, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11367
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Found at i:49 original size:23 final size:23
Alignment explanation
Indices: 19--65 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
9 ATTAACTAAT
19 AGAAACCGTTTGGTTTATTTGAG
1 AGAAACCGTTTGGTTTATTTGAG
42 AGAAACCGTTTGGTTTATTTGAG
1 AGAAACCGTTTGGTTTATTTGAG
65 A
1 A
66 AGTTTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (23 bp):
AGAAACCGTTTGGTTTATTTGAG
Found at i:3309 original size:320 final size:315
Alignment explanation
Indices: 2851--3680 Score: 884
Period size: 320 Copynumber: 2.6 Consensus size: 315
2841 CTCATAAATT
* * * *
2851 ATATAGAATTCAACGCCAAAAGGATTGAAC-GACTTTTCAAGCTTTTAATATCATTTTTCATATT
1 ATATATAATTCAACGCCAAAAAGATTG-ACGGACTTTTCACGCTTATAATATCATTTTTCA-ATT
* * *
2915 TTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATTCTTAA
64 TTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAA
* * * * ***
2980 ATACAATGTGGCTGATATTTGATTAGATGAATAAAGATATTTCAAGGAGTCT-CGGTGAAAAATC
129 ATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTAC-ACCAAAAATC
* * * *
3044 ATGCAAAACAAAG-CAGTGGCCCCGGAACGCGTTCTTAGTCAAAAAAAGTGATGGTTAGTACACG
193 ATGCAAAACAAAGTC-GGGGCCCC-GAACACGTTCTTAATCAAAAAAAGTGAT-G--AGTAAACG
* * * * * *
3108 ATTTCGGC-T-AAAAACTGACCTCAAAGGTTTTTTTCTCAATTTTTTACCACTATACTCAGAAAA
253 ATTTCGGCATCAAAAAC-GACCACAAAAG-TTTTTCCTCAATATTTTACCACAATACT-AAAAAA
3171 A
315 A
3172 ATATATAATTCAACGCCAAAAAGATTGACGGGA-TTTTCACGCTTATAATATCATTTTTTC-ATT
1 ATATATAATTCAACGCCAAAAAGATTGAC-GGACTTTTCACGCTTATAATATCA-TTTTTCAATT
* * * * *
3235 TTTCCCGAATTAATTTCTAATAAAATAGAAACAAGATTCAGCTGCCCGTAAAAACAAATCCTTAT
64 TTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAA
* *
3300 ATCCAATGTGCCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTACACCAAAAAT
129 ATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG--TCTACACCAAAAAT
*** ** * ** *
3365 CATGCAAAATTGAGTCGGGGTTCCGAACACGTTTTTAATCAAAAACTGTGATGAGTAAATGATTT
192 CATGCAAAACAAAGTCGGGGCCCCGAACACGTTCTTAATCAAAAAAAGTGATGAGTAAACGATTT
* *
3430 CGGCTAAAATTTTGCAAAAACGACCAGAAAAGTTTTTCCTCAATATTTTGCCACAATACTAAAAA
257 CGGC----A---T-CAAAAACGACCACAAAAGTTTTTCCTCAATATTTTACCACAATACTAAAAA
3495 AA
314 AA
* * * * * *
3497 AAATAATAATTCAACGCCAGAAAA-ATTGAAGCATTTTTCACGCTTCTAATATCGTTTTTCATAT
1 ATAT-ATAATTCAACGCCA-AAAAGATTGACGGACTTTTCACGCTTATAATATCATTTTTCA-A-
* *
3561 TTTTTTTCCGAATTTATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
62 -TTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCT
* *
3626 TAAATCTAATGTGGCTGAGATTTGGTTAGATGAACATAGATATTTCAAGGAGTCT
126 TAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCT
3681 TTATGTCAAG
Statistics
Matches: 428, Mismatches: 57, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
318 14 0.03
320 107 0.25
321 66 0.15
322 32 0.07
323 2 0.00
325 17 0.04
326 62 0.14
327 15 0.04
328 6 0.01
329 107 0.25
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (315 bp):
ATATATAATTCAACGCCAAAAAGATTGACGGACTTTTCACGCTTATAATATCATTTTTCAATTTT
TTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAAAT
CCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTACACCAAAAATCATG
CAAAACAAAGTCGGGGCCCCGAACACGTTCTTAATCAAAAAAAGTGATGAGTAAACGATTTCGGC
ATCAAAAACGACCACAAAAGTTTTTCCTCAATATTTTACCACAATACTAAAAAAA
Found at i:3616 original size:329 final size:320
Alignment explanation
Indices: 2851--3683 Score: 891
Period size: 329 Copynumber: 2.6 Consensus size: 320
2841 CTCATAAATT
* * * *
2851 ATATAGAATTCAACGCCAAAAGGATTGAA-CGACTTTTCAAGCTTTTAATATCATTTTTCATATT
1 ATATATAATTCAACGCCAAAA-AATTGAAGC-A-TTTTCACGCTTATAATATCATTTTTCATATT
* * *
2915 TTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATTCTTAA
63 TTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAA
* * * * * ***
2980 ATACAATGTGGCTGATATTTGATTAGATGAATAAAGATATTTCAAGGAG-TCT-CGGTGAAAAAT
128 ATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTACGACCAAAAAT
* * * *
3043 CATGCAAAACAAAGCAGTGGCCCCGGAACGCGTTCTTAGTCAAAAAAAGTGATGGTTAGTACACG
193 CATGCAAAACAAAGCAGGGGCCCCGGAACACGTTCTTAATCAAAAAAAGTGATGG-TAGTAAACG
* * * * * * *
3108 ATTTCGGCTAAAAACTGACCTCAAAGGTTTTTTTCTCAATTTTTTACCACTATACTCAGAAAAA
257 ATTTCGGCTAAAAACTGACCACAAAAGTTTTTTCCTCAATATTTTACCACAATACTAAAAAAAA
* *
3172 ATATATAATTCAACGCCAAAAAGATTGACGGGATTTTCACGCTTATAATATCATTTTT--TCATT
1 ATATATAATTCAACGCCAAAAA-ATTGA-AGCATTTTCACGCTTATAATATCATTTTTCAT-ATT
* * * * *
3235 TTTCCCGAATTAATTTCTAATAAAATAGAAACAAGATTCAGCTGCCCGTAAAAACAAATCCTTAT
63 TTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAA
*
3300 ATCCAATGTGCCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTAC-ACCAAAAA
128 ATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG-TTTTACGACCAAAAA
*** ** * ** *
3364 TCATGCAAAATTGAGTC-GGGGTTCC-GAACACGTTTTTAATCAAAAACTGTGAT-G-AGTAAAT
192 TCATGCAAAACAAAG-CAGGGGCCCCGGAACACGTTCTTAATCAAAAAAAGTGATGGTAGTAAAC
* *
3425 GATTTCGGCTAAAATTTTGCAAAAAC-GACCAGAAAAG-TTTTTCCTCAATATTTTGCCACAATA
256 GATTTCGGC--------T--AAAAACTGACCACAAAAGTTTTTTCCTCAATATTTTACCACAATA
3488 CTAAAAAAAA
311 CTAAAAAAAA
* *
3498 A-ATAATAATTCAACGCCAGAAAAATTGAAGCATTTTTCACGCTTCTAATATCGTTTTTCATATT
1 ATAT-ATAATTCAACGCCA-AAAAATTGAAGCA-TTTTCACGCTTATAATATCATTTTTCATA--
* *
3562 TTTTTTCCGAATTTATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
61 TTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTT
* *
3627 AAATCTAATGTGGCTGAGATTTGGTTAGATGAACATAGATATTTCAAGGAGTCTTTA
126 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGT-TTTA
3684 TGTCAAGAAA
Statistics
Matches: 428, Mismatches: 58, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
318 14 0.03
319 1 0.00
320 105 0.25
321 71 0.17
322 25 0.06
323 2 0.00
325 4 0.01
326 74 0.17
327 13 0.03
328 8 0.02
329 111 0.26
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (320 bp):
ATATATAATTCAACGCCAAAAAATTGAAGCATTTTCACGCTTATAATATCATTTTTCATATTTTT
TCCGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTAAATC
CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTACGACCAAAAATCAT
GCAAAACAAAGCAGGGGCCCCGGAACACGTTCTTAATCAAAAAAAGTGATGGTAGTAAACGATTT
CGGCTAAAAACTGACCACAAAAGTTTTTTCCTCAATATTTTACCACAATACTAAAAAAAA
Found at i:4973 original size:331 final size:328
Alignment explanation
Indices: 3690--5631 Score: 1665
Period size: 332 Copynumber: 5.9 Consensus size: 328
3680 TTTATGTCAA
** * *
3690 GAAAAATTTTTTCTCAAAATTTT-CCAAAATACTCATAAAAAATATATAATTCAATG-TCAAAAA
1 GAAAAATTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCT-AAAAA
* * *
3753 GATTGAAGAGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTTCCGAATTAATTTCTAAT
65 AATTGATGA-CTTTTCACGCTTCTAATATCGTTTTT-CA--TTTTTTTCCGAATTAATTTCTAAT
* ** * ** *
3818 TAAATCGAAACAAGATTCAGATGCATGCTTGTAAAAA-AAATTTGTTATA-TCGAATGTTACTGG
126 TAAATCAAAACAAGATTCAGATGC-T-C--GTAAAAACAAA-TCCTTAAATTC-AATGTGGCTGA
* * * * *
3881 GATTTGATTCGATGAATATTGGTATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAA-
185 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAATCATGCAAAACT-AAG
* * * **
3945 CAGGGGCCTCGGAACGCGTTTTTAGCCAAAAACCGTGAT-G--AGTA-ATCGATTTTAGCTAAAA
249 CCGGGGCCTCGAAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACA-CGATTTCGGCT-AAA
* *
4006 TTTTGCAAAAACTGATCT
312 TTTTGCAAAAA-TGACCC
* * * * *
4024 GAAAAATTTTTAT-TCAATTCTTTGCCATAATACTTAGAAAAAATATATAATTCAACGCAAAAAA
1 GAAAAATTTTT-TCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGC-TAAAA
** * * *
4088 AAATTGATGGGTTTTCACGCTTCTAATATCGTTTTTCA-TTTTTTCC-ATCTTTATTTATAATTA
64 AAATTGATGACTTTTCACGCTTCTAATATCGTTTTTCATTTTTTTCCGA-ATTAATTTCTAATTA
* *
4151 AAT-AGAAACAAGATTCAGATGCTCGT-AAAACAAATCCTTAAA-TCAATTGTGGCTTACATTTG
128 AATCA-AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAA-TGTGGCTGAGATTTG
* * * * *
4213 GTTAGATGAATATTGATATTTCAAGGAGTCTTT-CTGCCAAAAATTATGCAAAACTGAGCTAGGG
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTAC-GCAAAAAATCATGCAAAACTAAGC-CGGG
* * *
4277 TCC-CGAAACACGTTTTTAGCCAAAAACCGTGATGTTTTAGGTACACGATTTCAGCT--A-----
254 GCCTCGAAACACGTTTTTAGCCAAAAACCGTGATG-GTTA-GTACACGATTTCGGCTAAATTTTG
*
4334 -AAAACTGACCC
317 CAAAAATGACCC
* * * *
4345 GAAAAGTTATATCTCAATTTATTTTGCCACAATACTC--AAAAAATATATAATTCAACGCCAAAA
1 GAAAAATTTTTTCTCAA-TT-TTTTGCCACAATACTCATAAAAAATATATAATTCAACG-CTAAA
** * * * *
4408 AAAATTGATGGGTTTTCACGCTTCTAATATTGTTTTTCTTTTTTTTTATTTCCAAATTAAGTTCT
63 AAAATTGATGACTTTTCACGCTTCTAATATCGTTTTTC----ATTTT-TTTCCGAATTAATTTCT
* * * * * *
4473 AATTAAATCGAAACAAGATTTAGATCCTCGTAAAAACAAATCCTTATATGCAATGTGGCTAAGAT
123 AATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGAT
* * * * * * *
4538 TTGG-TCGATGAATAAAGATATTTCAGGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGG
188 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAATCATGCAAAACTAAGCCGG
* *
4602 GG-CTCCAGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAGTTTT
253 GGCCTCGA-AACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA-TTTT
4666 GCAAAAATGACCC
316 GCAAAAATGACCC
* * * * *
4679 GAAAAATTTTTTCCTCAATTTTTTGCCACAATACTCATAGAATATATATAATTAAAAGCTAAGAA
1 GAAAAATTTTTT-CTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCTAAAAA
* * * * * *
4744 GATTGGATGACTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAACTTCTAATTAA
65 AATT-GATGACTTTTCACGCTTCTAATATCGTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA
* * * * *
4809 ATCAAAATAAGATTCAGATACTCGTAAAAACAAATCCTTAAATTCAATGTGCCTAAGATTTGATT
129 ATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGGTT
* * * ** * * * *
4874 AGATGAATATAGGTATTCCACGGAGTCTCAACGTAAAAAATCAAGCAAAACTAAGCCGGGGTCTT
194 AGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAATCATGCAAAACTAAGCCGGGGCCTC
* * *
4939 GAAACACATTTTTAGCCAAAAACCGTTATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAA
259 GAAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAATTTTGC-AAAA
* *
5004 ATTAACC
322 ATGACCC
* ** * * * ** * *
5011 GAAAAATTTTTCCGTCAA-TTTTTGATAAAATACTCATAAAATATATATAATTTATTGGTAAGAA
1 GAAAAATTTTTTC-TCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCTAAAAA
* * * * **
5075 GATTAGAAGAATTTTCACGCTT-TAAATATCATTTTTCATTTTTTTTTTGAATTAATTTCTAATT
65 AATT-GATGACTTTTCACGCTTCT-AATATCGTTTTTCA-TTTTTTTCCGAATTAATTTCTAATT
* * * * **
5139 AAATCGAAACAAGATTCAGATGCTCTTAAAAACAAATTCTTAAATCCAATGTCACTGAGATTTGG
127 AAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGG
* * * * * * *
5204 TTAAATGAATATGGATATCTCAAAGAGTCTTGACGCCAAAAATCATGCAAAACTTAGCCGGGGCC
192 TTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAATCATGCAAAACTAAGCCGGGGCC
* * *
5269 TCGGAACGCGTTTTTAGCCAAAAACCGTGATGATTA-TCACACGATTTCGGCTAGAATTTTGCAA
257 TCGAAACACGTTTTTAGCCAAAAACCGTGATGGTTAGT-ACACGATTTCGGCTA-AATTTTGCAA
**
5333 AAATTGACTT
320 AAA-TGACCC
* * * * * *
5343 G-AAAGTTATTTTCTCAATTTTTAGCTACAATACTCATAAAAATTATATAATTCAACGCCAATAA
1 GAAAAATT-TTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCTAAAAA
* * * * *
5407 AATTGAAGGGCTTTTCATGCTTCTAATATCGTTTTTCCTATTATTTTCCAAATTAATTTCTAATT
65 AATTG-ATGACTTTTCACGCTTCTAATATCGTTTTT-C-ATTTTTTTCCGAATTAATTTCTAATT
* * * *** * * *
5472 AAATCGAAACATA-ATTTAGATGCTTGT-TTTACAAATCCTTAAATCCATTGTGGATGAGATTTG
127 AAATCAAAACA-AGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTG
* * * * *
5535 GTTAGATTAATATAGATATTTCAAGGAGTC-TCAGCTCAAAAAATCATGCAACATTGAA-CCGGG
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTA-CGCAAAAAATCATGCAAAACT-AAGCCGGG
* * *
5598 GCC-CCATAACGCGTTTTTAGCAAAAAACCGTGAT
254 GCCTCGA-AACACGTTTTTAGCCAAAAACCGTGAT
5632 TTCGACTATT
Statistics
Matches: 1321, Mismatches: 220, Indels: 136
0.79 0.13 0.08
Matches are distributed among these distances:
320 1 0.00
321 77 0.06
322 7 0.01
323 13 0.01
325 19 0.01
326 110 0.08
327 125 0.09
328 32 0.02
329 4 0.00
330 79 0.06
331 245 0.19
332 382 0.29
333 62 0.05
334 51 0.04
335 103 0.08
336 11 0.01
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (328 bp):
GAAAAATTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCTAAAAAA
ATTGATGACTTTTCACGCTTCTAATATCGTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAAT
CAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGGTTAG
ATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAATCATGCAAAACTAAGCCGGGGCCTCGA
AACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAATTTTGCAAAAATGA
CCC
Found at i:6523 original size:332 final size:330
Alignment explanation
Indices: 5642--8126 Score: 1796
Period size: 332 Copynumber: 7.5 Consensus size: 330
5632 TTCGACTATT
* * * * * * * * *
5642 ATAAAATATTTATAATTCAACTCAAAAAATATT-AGAGGACTTTTCACGCTTTTAATATCGTTAT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGA-AGGGCTTTTCACTCTTCTAATATCGTTTT
** ** * * *
5706 TAATATTTTTCTAAATTAATTTCTAATCAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAAT
65 TCCTATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAAT
* * * *
5771 CTTTCAATGCAATGTGGTTGAGATTTGATTAGATGAATATATATATATAGATAGATATATTTCAA
130 CCTTAAATCCAATGTGGCTGAGATTTGATTAGATG---------A-AT--ATAG--ATATTTCAA
** * *** * * *
5836 GGAGTCTCGACGATAAAAATCATGCAAAACTGAGCCGATACCCTGTAACGCGTTTTTAGCAAAAA
181 GGAGTCTCGACGCCAAAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCATTTTTAGC-----
* ** * * *
5901 AAAAAAACCGTGATGGTTAGTACACGATTTCACCTAAAATTCTGCAAAAAACTGACTAGAATA-A
241 -CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC-AAAAATTGAC-CGAA-AGA
* * * *
5965 TTTTTTCTTATTTTTTGGCTAAAATACTC
302 TATTTCCTCAATTTTTGGCTAAAATACTC
* * * * * * * * * * * *
5994 AT-GAATATATATAATTTAATGCCAAAATGATTGGAGGACATTTCACGCTTTTCATATCATTTTT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACTCTTCTAATATCGTTTTT
* *
6058 CATATTTTTTCTC-AATTAATTTCTAATTAAATCGAAATAAGATTTAGATGCTCGTAAAAACAAA
66 CCTA-TTTTTC-CGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
* * * * * * * *
6122 TCCTTAAATGCATTGTGACTGAGATTTGATTAGATGAATATGGATATCTCAAGTAGCCT-TAGCG
129 TCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGA-CG
* *
6186 CCAAAAATCATGCAAAACT-AACACGGGGCCCTGAAACGCATTTTTAGCCAAAAACCGTGATGAT
193 CCAAAAATCATGCAAAACTGAAC-CGGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGT
* * * * *
6250 TATTACACAATTTCGGCTAACATTTTGCAAAAATTAGGCGGAAAGATATTTCCTCAATTTATT-G
257 TAGTACACGATTTCGGCTAAAATTTTGCAAAAATT-GACCGAAAGATATTTCCTCAATTT-TTGG
*
6314 CTAAATTA-TC
320 CTAAAATACTC
* * * * * *
6324 ATGAAAAAAAATATAATTCTACGCCAAAAATATTGAAGGGTTTTTTACTATTCTAATATCGTTTT
1 AT-AAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACTCTTCTAATATCGTTTT
* *
6389 TCCTACCTTTTCCGAATTAATTCCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
65 TCCTA-TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
* * * *
6454 TCCTTAAATCCAATGTGGCCGAGATTTGAGTAGATGAATATAGATAGTTT-AAGGAGTCTTGATG
129 TCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATA-TTTCAAGGAGTCTCGACG
* * * *** * * * * *
6518 CCAAAAATCATGCAATACTCATA-TGGGGTATCGGAACACACTTTTAGCCAAAACAATTATCGCG
193 CCAAAAATCATGCAAAACTGA-ACCGGGGCCCCGAAACGCATTTTTAGCC--AA-AA--ACCGTG
* * *
6582 AT-GTTA--AC-CGATTTCGGCTAATATTTTGTAAAAAATGACTC-AAA-ATATTTTCCCTCAAT
252 ATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAC-CGAAAGATA-TTT-CCTCAAT
* * * *
6641 TTTTAGCCACAATAATC
314 TTTTGGCTAAAATACTC
* * *
6658 ATAAGAAATATATAATTTAACGCCAAAAAGATTGAAGGGCTTTTCACGT-TTCTAATACCGTTTT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAC-TCTTCTAATATCGTTTT
* * * * * *
6722 TCCTATTTTTTTTCCGAATTAATTTCTAATTAAAACAAAACATGATTCAGATGCT--T--ATA-T
65 TCCTA---TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACA
* *
6782 AA-----AAA--CAA--TGGCTG-GAATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGG
127 AATCCTTAAATCCAATGTGGCTGAG-ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGA
* * * * ** * *
6837 TGCCAAAAATTATTCAAAACTTAA-ATGGGCCCCGAAACGCGTTTATTTTGCCAAAAACCGTGAT
191 CGCCAAAAATCATGCAAAACTGAACCGGGGCCCCGAAACGC-ATT-TTTAGCCAAAAACCGTGAT
* * * * **
6901 GATTATTATACAACTTT-GGCTAAAATTTTGCAAAAATTGAACCGAAAGATAAATCCTCAATTTT
254 GGTTAGTACACGA-TTTCGGCTAAAATTTTGCAAAAATTG-ACCGAAAGATATTTCCTCAATTTT
* * *
6965 TAGCCATAATACTC
317 TGGCTAAAATACTC
* ** * ** * *
6979 ATAAAAAATATATGATTCAACGTAAAAAATATTGAAGATC-TTTCGACGCTTTTAATAT--TTTT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTC-ACTCTTCTAATATCGTTTT
* * *
7041 T-C------T--GAATTAATTTCTAAATAAATCGAAACATGATTCAGATGCTCGTAAAAA-AAAT
65 TCCTATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAAT
* * * * * * * * *
7096 -ATTCAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGTTATTTCAAGAAGTGTCGGCGCC
130 CCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCC
* * * * * * * * *
7160 AAAAATCTTGTAAAACTGAGCTGGTGCCCCGAAATGCGTTTTTAGCCAAAAAATCATGATGGTTA
195 AAAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCATTTTTAGCC-AAAAACCGTGATGGTTA
* * * * *
7225 GTACACGATTTTGGCTAAAATTTTGCAAAAAATGACTCGAAAAATTTTTCCTCAATTTTTGGATA
259 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGAC-CGAAAGATATTTCCTCAATTTTTGGCTA
7290 AAATACTC
323 AAATACTC
* * * * * *
7298 ATAAAATATATATAATTTAAC-CGTAAAAAGATT-AGAGGACTTTTCACGCGTT-TATTATCGTT
1 ATAAAAAATATATAATTCAACGC-CAAAAAGATTGA-AGGGCTTTTCACTC-TTCTAATATCG-T
* * * *
7360 TTTTCATATTTTTCTGTATTAATTTC-AATTAAATCGAAACAAGATTTAGATGCTTGTAAAAACA
62 TTTTCCTATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACA
* ** * * *
7424 TATTTTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAGTCTTGGC
127 AATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGAC
* * * * * * * * *
7489 GCCAAAAATGATGCAAAACTGAGCC-TGGACCCTAGGACG-TTTTTTATCCAAAAACTGTGATGG
192 GCCAAAAATCATGCAAAACTGAACCGGGGCCCCGA-AACGCATTTTTAGCCAAAAACCGTGATGG
* * * *
7552 TTAATACACGTTTTCGGCTAAAATTTTGTAAACATTGATCCGAAAGATATTTCCTCAATTTTTGG
256 TTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA-CCGAAAGATATTTCCTCAATTTTTGG
*
7617 GTAAAATACTC
320 CTAAAATACTC
* * *
7628 ATAAAAAATATATAACTCAACGCCAAAAAGATTGAA-GGCTTTTGA-TGTTTCTAATATCGTTTT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACT-CTTCTAATATCGTTTT
* * * * * * *
7691 TCCAAATTTTCCAAATTAATTTCCAATTAAATTGAAACAAGATTTAGATGTTCGTAAAAAAAAAT
65 TCCTATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAAT
** * * *
7756 CCTTAAAT-TTATGGTGGGTGAGATTTGATTAGATGAATATAGATATTTCAAGTAGTCTCGAAGC
130 CCTTAAATCCAAT-GTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGC
* * * * * * * * *
7820 CAGAAATGAAGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCGAAAAACCGTGATGGTTT
194 CAAAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGAT-G---
* *
7885 GTTAGTACACGA-TTCAGCTAAAATTTTGCAAAAATTGACACGAAAGAT-TTCTTCTCAATTTTT
255 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAC-CGAAAGATATT-TCCTCAATTTTT
7948 GGCTAAAATACTC
318 GGCTAAAATACTC
* * * * * *
7961 AT-AAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTTACGCTTTTAATATCCTATTT
1 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACTCTTCTAATATCGTTTTT
* ** * * * * * * *
8025 CTTATTTTTTTGTAAAATAATTTCTAATTAAAACGAAATAAGATTCAAATGCTCGTAATAGCAAA
66 CCTATTTTTCCG--AATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
* * *
8090 TTCTTAAATCCAATGTTGCTGAGATTTGGTTAGATGA
129 TCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
8127 TGTAAAGTAT
Statistics
Matches: 1697, Mismatches: 338, Indels: 213
0.75 0.15 0.09
Matches are distributed among these distances:
307 37 0.02
309 2 0.00
311 4 0.00
315 2 0.00
317 9 0.01
318 16 0.01
319 171 0.10
320 40 0.02
321 141 0.08
322 20 0.01
323 6 0.00
325 3 0.00
328 25 0.01
329 125 0.07
330 165 0.10
331 64 0.04
332 343 0.20
333 184 0.11
334 20 0.01
335 111 0.07
336 5 0.00
337 9 0.01
338 52 0.03
340 3 0.00
342 2 0.00
343 1 0.00
351 51 0.03
352 86 0.05
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (330 bp):
ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACTCTTCTAATATCGTTTTT
CCTATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATC
CTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCA
AAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGT
ACACGATTTCGGCTAAAATTTTGCAAAAATTGACCGAAAGATATTTCCTCAATTTTTGGCTAAAA
TACTC
Found at i:7249 original size:319 final size:323
Alignment explanation
Indices: 6798--7981 Score: 939
Period size: 319 Copynumber: 3.6 Consensus size: 323
6788 AATGGCTGGA
* * * **
6798 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGTGCCAAAAATTAT-TCAAAACTTAAA
1 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATT-TGT-AAAACTGAGC
* * * * * * *
6862 TGGGCCCCGAAACGCGTTTATTTTGCC-AAAAACCGTGATGATTATTATACAACTTTGGCTAAAA
64 TGGGCCCCGAAACGCGTTT-TTTAGCCAAAAAATCGTGATGGTTAATACACGATTTTGGCTAAAA
** * ** *
6926 TTTTGCAAAAATTGAACCGAAAGATAAATCCTCAATTTTTAGCCATAATACTCATAAAAAATATA
128 TTTTGCAAAAATTGAACCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAATATA
*
6991 TGATTCAACGTAAAAAATATTGAAGA-TCTTTCGACGC-TT-TTA-AT-AT-TTTTTCTGAATTA
193 TAATTCAACGTAAAAAATATTGAAGACT-TTTC-ACGCGTTATTATATCATATTTTTCTGAATTA
* * *
7050 ATTTCTAAATAAATCGAAACATGATTCAGATGCTCGTAAAAA-A-AATATTCAATGCAATGTGGC
256 ATTTC-AAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACATAATATTAAATCCAATGTGGC
7113 TAAG
320 TAAG
* * * *
7117 ATTTTATTAGATGAATATAGTTATTTCAAGAAGTGTCGGCGCCAAAAATCTTGTAAAACTGAGCT
1 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAAT-TTGTAAAACTGAGCT
* * *
7182 GGTGCCCCGAAATGCG-TTTTTAGCCAAAAAATCATGATGGTTAGTACACGATTTTGGCTAAAAT
65 GG-GCCCCGAAACGCGTTTTTTAGCCAAAAAATCGTGATGGTTAATACACGATTTTGGCTAAAAT
* * * *
7246 TTTGCAAAAAATG-ACTCGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCATAAAATATATA
129 TTTGCAAAAATTGAAC-CGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAATATA
* * * *
7310 TAATTTAACCGTAAAAAGAT-TAGAGGACTTTTCACGCGTTTATTATCGTTTTTTCATATTTTTC
193 TAATTCAA-CGTAAAAA-ATATTGAAGACTTTTCACGCG-TTATTA------TATCATATTTTTC
* * * * * *
7374 TGTATTAATTTCAATTAAATCGAAACAAGATTTAGATGCTTGTAAAAACATATTTTTAAATCCAA
249 TGAATTAATTTCAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACATAATATTAAATCCAA
*
7439 TGTGGCTGAG
314 TGTGGCTAAG
* * * *
7449 ATTTGATTAGATGAATATAGATATCTCAAGGAGTCTTGGCGCCAAAAATGATGCAAAACTGAGCC
1 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAAT-TTGTAAAACTGAG-C
* * * * *
7514 T-GGACCC--TAGGACGTTTTTTATCCAAAAACT-GTGATGGTTAATACACG-TTTTCGGCTAAA
64 TGGGCCCCGAAACG-CGTTTTTTAGCCAAAAAATCGTGATGGTTAATACACGATTTT-GGCTAAA
* * * *
7574 ATTTTGTAAACATTGATCCGAAAGATATTTCCTCAATTTTTGGGTAAAATACTCATAAAAAATAT
127 ATTTTGCAAAAATTGAACCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAATAT
* ** * * * * * * *
7639 ATAACTCAACGCCAAAAAGATTGAAGGCTTTTGATGTTTC-TAATATCGTTTTTCCA-AATTTTC
192 ATAATTCAACGTAAAAAATATTGAAGACTTTTCACG---CGT--TAT--TATAT-CATATTTTTC
** * * * * * * *
7702 CAAATTAATTTCCAATTAAATTGAAACAAGATTTAGATGTTCGTAAAAA-AAAATCCTTAAAT-T
249 TGAATTAATTT-CAAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACATAAT-ATTAAATCC
* * *
7765 TATGGTGGGTGAG
312 AAT-GTGGCTAAG
* ** * ** * * *
7778 ATTTGATTAGATGAATATAGATATTTCAAGTAGTCTCGAAGCCAGAAATGAAGCAAAATTGAGCC
1 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAAT-TTGTAAAACTGAGCT
* * * * **
7843 GGGTCCCCGGAACGCG-TTTTTAG-CGAAAAACCGTGATGGTTTGTTAGTACACGA-TTCAGCTA
65 GGG-CCCCGAAACGCGTTTTTTAGCCAAAAAATCGTGAT-G---GTTAATACACGATTTTGGCTA
* *
7905 AAATTTTGCAAAAATTG-ACACGAAAGAT-TTCTTCTCAATTTTTGGCTAAAATACTCAT-AAAA
125 AAATTTTGCAAAAATTGAAC-CGAAAGATATT-TCCTCAATTTTTGGATAAAATACTCATAAAAA
7967 ATATATAATTCAACG
188 ATATATAATTCAACG
7982 CCAAAAAGAT
Statistics
Matches: 698, Mismatches: 116, Indels: 89
0.77 0.13 0.10
Matches are distributed among these distances:
318 8 0.01
319 148 0.21
320 31 0.04
321 5 0.01
322 3 0.00
328 24 0.03
329 136 0.19
330 135 0.19
331 40 0.06
332 101 0.14
333 54 0.08
334 13 0.02
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (323 bp):
ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATTTGTAAAACTGAGCTG
GGCCCCGAAACGCGTTTTTTAGCCAAAAAATCGTGATGGTTAATACACGATTTTGGCTAAAATTT
TGCAAAAATTGAACCGAAAGATATTTCCTCAATTTTTGGATAAAATACTCATAAAAAATATATAA
TTCAACGTAAAAAATATTGAAGACTTTTCACGCGTTATTATATCATATTTTTCTGAATTAATTTC
AAATAAATCGAAACAAGATTCAGATGCTCGTAAAAACATAATATTAAATCCAATGTGGCTAAG
Found at i:8504 original size:15 final size:16
Alignment explanation
Indices: 8486--8515 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8476 ATAAATAATA
8486 ATATTATAAT-TAAAT
1 ATATTATAATATAAAT
8501 ATATTATAATATAAA
1 ATATTATAATATAAA
8516 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATATAAAT
Found at i:8514 original size:35 final size:34
Alignment explanation
Indices: 8475--8541 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 34
8465 GTTTCATGAC
* *
8475 TATAAATAATAA-TATTATAATTAAATATATTATAA
1 TATAAA-AATAATTATTAGAAGTAAAT-TATTATAA
8510 TATAAAAATAATTATTAGAAGTAAATTATTAT
1 TATAAAAATAATTATTAGAAGTAAATTATTAT
8542 TTACAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 11 0.38
35 18 0.62
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (34 bp):
TATAAAAATAATTATTAGAAGTAAATTATTATAA
Found at i:8794 original size:13 final size:13
Alignment explanation
Indices: 8776--8813 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8766 TATATAGTAG
8776 TAAGATAAGATAA
1 TAAGATAAGATAA
*
8789 TAAGAT-AGTAAAA
1 TAAGATAAG-ATAA
8802 TAAGATAAGATA
1 TAAGATAAGATA
8814 TAATCCGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (13 bp):
TAAGATAAGATAA
Found at i:9173 original size:22 final size:21
Alignment explanation
Indices: 9149--9292 Score: 101
Period size: 22 Copynumber: 6.2 Consensus size: 21
9139 TGAATATTTT
9149 TATGAAATTTTGATAACTACC
1 TATGAAATTTTGATAACTACC
* *
9170 TTATTAAATTTTGATAACCACGC
1 -TATGAAATTTTGATAACTAC-C
9193 TATGAAATTTTGATAACTTACC
1 TATGAAATTTTGATAAC-TACC
*
9215 TATAAAATATGAAATTTTGATAATCTAAC
1 -------TATGAAATTTTGATAA-CTACC
* *
9244 TATGAAATTTTAATAAACCTTCC
1 TATGAAATTTTGAT-AA-CTACC
*
9267 TATGAAATTTTG-TAACCTTCC
1 TATGAAATTTTGATAA-CTACC
9288 TATGA
1 TATGA
9293 TTTTGTATAA
Statistics
Matches: 101, Mismatches: 10, Indels: 23
0.75 0.07 0.17
Matches are distributed among these distances:
21 13 0.13
22 49 0.49
23 19 0.19
29 19 0.19
30 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (21 bp):
TATGAAATTTTGATAACTACC
Found at i:9236 original size:73 final size:73
Alignment explanation
Indices: 9149--9290 Score: 184
Period size: 73 Copynumber: 1.9 Consensus size: 73
9139 TGAATATTTT
* * *
9149 TATGAAATTTTGATAA-CTACCTTATTAAATTTTGAT-AACC-ACGCTATGAAATTTTGATAA-C
1 TATGAAATTTTGATAATCTAAC-TATGAAATTTTAATAAACCTAC-CTATGAAATTTTG-TAACC
9210 TTACCTATAAAA
63 TT-CCTATAAAA
*
9222 TATGAAATTTTGATAATCTAACTATGAAATTTTAATAAACCTTCCTATGAAATTTTGTAACCTTC
1 TATGAAATTTTGATAATCTAACTATGAAATTTTAATAAACCTACCTATGAAATTTTGTAACCTTC
9287 CTAT
66 CTAT
9291 GATTTTGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
73 36 0.59
74 24 0.39
75 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (73 bp):
TATGAAATTTTGATAATCTAACTATGAAATTTTAATAAACCTACCTATGAAATTTTGTAACCTTC
CTATAAAA
Found at i:9246 original size:29 final size:29
Alignment explanation
Indices: 9193--9251 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
9183 ATAACCACGC
*
9193 TATGAAATTTTGATAACTTACCTATAAAA
1 TATGAAATTTTGATAACTTAACTATAAAA
*
9222 TATGAAATTTTGATAA-TCTAACTATGAAA
1 TATGAAATTTTGATAACT-TAACTATAAAA
9251 T
1 T
9252 TTTAATAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 1 0.04
29 26 0.96
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (29 bp):
TATGAAATTTTGATAACTTAACTATAAAA
Found at i:9273 original size:23 final size:21
Alignment explanation
Indices: 9222--9319 Score: 83
Period size: 21 Copynumber: 4.5 Consensus size: 21
9212 ACCTATAAAA
* **
9222 TATGAAATTTTGATAATCTAAC
1 TATGAAATTTT-ATAACCTTCC
9244 TATGAAATTTTAATAAACCTTCC
1 TATGAAATTTT-AT-AACCTTCC
*
9267 TATGAAATTTTGTAACCTTCC
1 TATGAAATTTTATAACCTTCC
*
9288 TATG-ATTTTGTATAACC-TCTC
1 TATGAAATTT-TATAACCTTC-C
*
9309 TATGAGATTTT
1 TATGAAATTTT
9320 GTTGATCTCC
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.10
21 24 0.38
22 17 0.27
23 16 0.25
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (21 bp):
TATGAAATTTTATAACCTTCC
Done.