Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020711.1 Corchorus olitorius cultivar O-4 contig20744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11210
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Found at i:8 original size:2 final size:2
Alignment explanation
Indices: 2--52 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
1 G
2 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
44 TC TC TC TC T
1 TC TC TC TC T
53 ACCTAAAAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:3303 original size:22 final size:22
Alignment explanation
Indices: 3269--3412 Score: 100
Period size: 22 Copynumber: 6.5 Consensus size: 22
3259 TGAATATTTT
*
3269 TATGAAATATTGATAATTACCC
1 TATGAAATTTTGATAATTACCC
* ** *
3291 TATTAAATTTTGATAACCACGC
1 TATGAAATTTTGATAATTACCC
3313 TATGAAATTTTGATAATTA-CC
1 TATGAAATTTTGATAATTACCC
**
3334 TATGAAATTGCGATAA--ACTCC
1 TATGAAATTTTGATAATTAC-CC
* * *
3355 ATATGAAACTTTGATAACCTA-AC
1 -TATGAAATTTTGATAA-TTACCC
* *
3378 TATGAAATTTTAATAAATCT-TCC
1 TATGAAATTTTGAT-AAT-TACCC
3401 TATGAAATTTTG
1 TATGAAATTTTG
3413 TAACCTTCCT
Statistics
Matches: 93, Mismatches: 20, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.01
21 17 0.18
22 58 0.62
23 16 0.17
25 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.38
Consensus pattern (22 bp):
TATGAAATTTTGATAATTACCC
Found at i:3394 original size:44 final size:45
Alignment explanation
Indices: 3312--3418 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
3302 GATAACCACG
* * *
3312 CTATGAAATTTTGATAA-TTACCTATGAAATTGCGATAAA-C-TC
1 CTATGAAATTTTGATAACCTAACTATGAAATTGCAATAAATCTTC
* **
3354 CATATGAAACTTTGATAACCTAACTATGAAATTTTAATAAATCTTC
1 C-TATGAAATTTTGATAACCTAACTATGAAATTGCAATAAATCTTC
3400 CTATGAAATTTTG-TAACCT
1 CTATGAAATTTTGATAACCT
3419 TCCTATGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.02
43 15 0.28
44 23 0.43
45 12 0.22
46 3 0.06
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37
Consensus pattern (45 bp):
CTATGAAATTTTGATAACCTAACTATGAAATTGCAATAAATCTTC
Found at i:3465 original size:21 final size:20
Alignment explanation
Indices: 3396--3472 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 20
3386 TTTAATAAAT
3396 CTTCCTATGAAATTTTGTAAC
1 CTTCCTATG-AATTTTGTAAC
*
3417 CTTCCTATGATTTTTGATAAC
1 CTTCCTATGAATTTTG-TAAC
* *
3438 CTCCCTATGAGATTTTGTTAAT
1 CTTCCTATGA-ATTTTG-TAAC
3460 C-TCCTAT-AATTTT
1 CTTCCTATGAATTTT
3473 TTGATATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 5 0.10
20 7 0.15
21 27 0.56
22 9 0.19
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (20 bp):
CTTCCTATGAATTTTGTAAC
Found at i:5494 original size:2 final size:2
Alignment explanation
Indices: 5487--5517 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
5477 ATAGTGTAAT
5487 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5518 ACATAAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:5507 original size:15 final size:15
Alignment explanation
Indices: 5487--5515 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
5477 ATAGTGTAAT
5487 TATATATATATATAA
1 TATATATATATATAA
5502 TATATATATATATA
1 TATATATATATATA
5516 TAACATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATATATATATAA
Found at i:5509 original size:17 final size:16
Alignment explanation
Indices: 5483--5518 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
5473 AATAATAGTG
5483 TAATTATATATATATA
1 TAATTATATATATATA
5499 TAATATATATATATATA
1 TAAT-TATATATATATA
5516 TAA
1 TAA
5519 CATAAAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTATATATATATA
Found at i:8078 original size:19 final size:19
Alignment explanation
Indices: 8038--8078 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8028 AGATTATAGT
* *
8038 AAAACCAAGATAATCAATC
1 AAAACCAAGATAATAAACC
*
8057 AAAACCGAGATAATAAACC
1 AAAACCAAGATAATAAACC
8076 AAA
1 AAA
8079 CCCATCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.61, C:0.20, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAACCAAGATAATAAACC
Found at i:9104 original size:5 final size:5
Alignment explanation
Indices: 9094--9128 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
9084 TTTTTTCCCT
9094 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTCC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT-C TTTT
9129 TCCCTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:9112 original size:15 final size:16
Alignment explanation
Indices: 9081--9128 Score: 64
Period size: 15 Copynumber: 3.0 Consensus size: 16
9071 TATTTCCCCC
9081 CTTTT-TTTTCCCTTTTT
1 CTTTTCTTTT-CC-TTTT
9098 CTTTTCTTTT-CTTTT
1 CTTTTCTTTTCCTTTT
9113 CTTTTCTTTTCCTTTT
1 CTTTTCTTTTCCTTTT
9129 TCCCTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 14 0.48
16 6 0.21
17 5 0.17
18 4 0.14
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
CTTTTCTTTTCCTTTT
Found at i:9165 original size:10 final size:10
Alignment explanation
Indices: 9095--9167 Score: 54
Period size: 10 Copynumber: 8.1 Consensus size: 10
9085 TTTTTCCCTT
*
9095 TTTCTTTTCT
1 TTTCTTTTCC
*
9105 TTTCTTTTCT
1 TTTCTTTTCC
9115 TTTCTTTTCC
1 TTTCTTTTCC
9125 --T-TTTTCC
1 TTTCTTTTCC
*
9132 -CT-TTTTCC
1 TTTCTTTTCC
9140 TTT-TTTT-C
1 TTTCTTTTCC
*
9148 -TTCCTTTCC
1 TTTCTTTTCC
9157 TTTCTTTTCC
1 TTTCTTTTCC
9167 T
1 T
9168 GGCTTAGGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
7 8 0.15
8 12 0.22
9 6 0.11
10 28 0.52
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTCTTTTCC
Found at i:9297 original size:18 final size:18
Alignment explanation
Indices: 9270--9304 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9260 AGGCCCTTTC
9270 TCTTCCTTTTTTTTTCTT
1 TCTTCCTTTTTTTTTCTT
*
9288 TCTTCTTTTTTTTTTCT
1 TCTTCCTTTTTTTTTCT
9305 CCATCTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTCCTTTTTTTTTCTT
Found at i:9298 original size:15 final size:15
Alignment explanation
Indices: 9278--9329 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
9268 TCTCTTCCTT
9278 TTTTTTTCTTTCTTC
1 TTTTTTTCTTTCTTC
*
9293 TTTTTTT-TTTCTCC
1 TTTTTTTCTTTCTTC
*
9307 ATCTTTTTCTTCCTCTTC
1 -TTTTTTTCTT--TCTTC
9325 TTTTT
1 TTTTT
9330 CCGGTGACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 6 0.21
15 13 0.45
16 2 0.07
17 4 0.14
18 4 0.14
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTTTCTTTCTTC
Found at i:9311 original size:17 final size:18
Alignment explanation
Indices: 9276--9314 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9266 TTTCTCTTCC
* *
9276 TTTTTTTTTCTTTCTTCT
1 TTTTTTTTTCTTCCATCT
9294 TTTTTTTTTC-TCCATCT
1 TTTTTTTTTCTTCCATCT
9311 TTTT
1 TTTT
9315 CTTCCTCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTTTCTTCCATCT
Found at i:10602 original size:334 final size:333
Alignment explanation
Indices: 9689--11206 Score: 1157
Period size: 334 Copynumber: 4.5 Consensus size: 333
9679 CACTCTTAAT
* * * *
9689 GCTTCTAATATTGTTTTTCCTATTTTTTTCCAAATTAATTTTTAATTAAATCGTAACAAGATTCA
1 GCTTCTAATATCGTTTTTCATATTTTTTT-CAAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * * * *
9754 GATTCTCCTAAAAACAAATCTTTAAATCTAATGTGGCTGAGATTTGGTTAGATGAATATAAATAT
65 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * *
9819 TTCAAGGAGTCTT-GCCGCCAAAAATCATGCAAAACTAAGTCGG-GCCCCAAAACGCGTTTTTAG
130 TTCAAGGAGTCTTAGCTGCCAAAAATCATGCAAAACTAACTCGGAGCCCCAGAACGCGTTTTTAG
* ** * * * ** *
9882 CCGAAAACCGTGATGGTTAACGTACACGATTTCGGCT-AAATTTTGCAAAAATTGACCCGGAAGA
195 CC-AAAAACGAAATCGTGATCGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAATA
* * * *
9946 TTTTTCCTC-ATTTTCTAGCGAAAATACTCATAAA-AGT-TAAATAATTCGACGACAAAAA-AAT
259 TTTTTCCTCAATTTT-TAGC-AAAATACTCATAAACA-TATATATAATTCAACGCCAAAAAGATT
* *
10007 GAAAGCCTTTTTCAC
321 G-AAGGC-TTCTCAC
* * *
10022 GCTTCTAATATCGTTTTTCATATTTTGTTTCAAAATTAATTTCTGATTAAATCGAAACAGGATTT
1 GCTTCTAATATCGTTTTTCATATTTT-TTTC-AAATTAATTTCTAATTAAATCGAAACAAGATTC
** * *
10087 AGAAACTCGTACAAACAAATCCTTAAATACAATGTGGCTGAGATTTGGTTAGATGAATGTATGTA
64 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG-A---A--TA
* * **
10152 TGTATGTATATATATATTCTAAGGAGTCTTGGC-GTCAAAAATCATGCAAAACTAACTTAGAGCC
123 --TA-G-----ATAT-TTC-AAGGAGTCTTAGCTGCCAAAAATCATGCAAAACTAACTCGGAGCC
* * * * * *
10216 CCGGAA--C-------G-------CGAAATCATGAT-GTTAAACAATTTCGGCAAAAATTTTACA
178 CCAGAACGCGTTTTTAGCCAAAAACGAAATCGTGATCG-TACACGATTTCGGCTAAAATTTTGCA
* *
10264 AAAATTGACCCAAAATATTTTT-CTCAATTTTTAGTCACAATACTCATAAA-ATATATATAACTC
242 AAAATTGACCCAAAATATTTTTCCTCAATTTTTAG-CAAAATACTCATAAACATATATATAATTC
10327 AACGCCAAAAAGATTGAAGGGCTTCTCAC
306 AACGCCAAAAAGATTGAA-GGCTTCTCAC
* * *
10356 GCTTCTAATATCGTTTTTCGTATTTGTTTTCAAATTAATTTCTAATTAAATTGAAACATGATTCA
1 GCTTCTAATATCGTTTTTCATATTT-TTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * *
10421 AATGCTCGTAAAAACAAATCCTTAAATCCAATGTAGCTAAGATTTGGTTAGATGAATATAGATAT
65 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * * * *
10486 TTCAAGG-GATGTT-GCTACTAAAAATCATGCAACACTAACCCGGAGCCCCAGAACGCGTTTTTA
130 TTCAAGGAG-TCTTAGCTGCCAAAAATCATGCAAAACTAACTCGGAGCCCCAGAACGCGTTTTTA
** *
10549 GCCAAAAAAAAAAACCGTGATCGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA-CCAGAAA
194 GCC-AAAAACGAAATCGTGATCGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCA-AAA
* * * *
10613 TATTTTTCCTCCATTTTTAGCCACAATACTCATATAATATATATATATATATATATAAAATTAAA
257 TATTTTTCCTCAATTTTTAG-CAAAATACTC---------ATA-A-ACATATATAT--AATTCAA
* * * *
10678 AGCCTAAAAGATTGGAGGATTCTTCAC
308 CGCCAAAAAGATTGAAGGCTTC-TCAC
* * * * *
10705 GCTTTTAATATCGTTTTTCATATTTTTCTGAATTTATTTTCTAATTAAATCGAAACAAGATTCAG
1 GCTTCTAATATCGTTTTTCATATTTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* ** * ** *
10770 ATTCTCGTAAAAACAAATCCTTAAATTGAATGTGGGTGAGATTTCATTAGATGAATATATATATT
66 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * * *
10835 TCAAGGAGTC-TAGGTGCCAAAAATCATGCAAAACTAAGTCGGGGTCCC-GAAACGCGTTTTTAG
131 TCAAGGAGTCTTAGCTGCCAAAAATCATGCAAAACTAACTCGGAGCCCCAG-AACGCGTTTTTAG
** * * * * ***
10898 CCAAAAACGTGA-CG-GTTAGTACACGATTTTGGCTAAAATTTTGTAAAAAAAAAAAACCCAAAA
195 CCAAAAACGAAATCGTGATCGTACACGATTTCGGCTAAAATTTTG---CAAAAATTGACCCAAAA
* * * * * * ** *
10961 AATTTTTCCGTCAATTTTTGGCATAAATAATCATAAAACATATACATAATTTAATGTTAAAAGGA
257 TATTTTTCC-TCAATTTTTAGCA-AAATACTCAT-AAACATATATATAATTCAACGCCAAAAAGA
* * *
11026 TTGGATGACTTTTCAC
319 TT-GAAGGCTTCTCAC
* * * * *
11042 GCTTTTAATATCG-TTTTCATATTTTTCT-GAATTAATTTCTAATTAAACCGAAACAAGATTGAG
1 GCTTCTAATATCGTTTTTCATATTTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* * * * * * * * *
11105 ATGCTCGTAAAAACAAATTCTTATATTCAATTGTAGCTGATATTTGATTAGATGGATGTGGATAT
66 ATGCTCGTAAAAACAAATCCTTAAATCCAA-TGTGGCTGAGATTTGGTTAGATGAATATAGATAT
* * * *
11170 CTCAATGAGTTTTTGGC-GCCAAAAATCATGCAAAACT
130 TTCAAGGAG-TCTTAGCTGCCAAAAATCATGCAAAACT
11207 TAGA
Statistics
Matches: 949, Mismatches: 157, Indels: 154
0.75 0.12 0.12
Matches are distributed among these distances:
316 3 0.00
317 36 0.04
318 3 0.00
319 5 0.01
324 1 0.00
325 2 0.00
326 1 0.00
327 2 0.00
329 1 0.00
332 1 0.00
333 107 0.11
334 218 0.23
335 119 0.13
336 48 0.05
337 52 0.05
338 7 0.01
339 8 0.01
340 5 0.01
341 1 0.00
342 3 0.00
344 3 0.00
345 27 0.03
346 3 0.00
347 16 0.02
348 167 0.18
349 68 0.07
350 33 0.03
351 9 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (333 bp):
GCTTCTAATATCGTTTTTCATATTTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAG
ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
TCAAGGAGTCTTAGCTGCCAAAAATCATGCAAAACTAACTCGGAGCCCCAGAACGCGTTTTTAGC
CAAAAACGAAATCGTGATCGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAATATT
TTTCCTCAATTTTTAGCAAAATACTCATAAACATATATATAATTCAACGCCAAAAAGATTGAAGG
CTTCTCAC
Found at i:10968 original size:348 final size:338
Alignment explanation
Indices: 10334--11206 Score: 874
Period size: 348 Copynumber: 2.5 Consensus size: 338
10324 CTCAACGCCA
* * * * * *
10334 AAAAGATTGAAGGGCTTC-TCACGCTTCTAATATCGTTTTTCGTATTTGTTTTCAAATTAATTTC
1 AAAAGATTGGA-GGATTCTTCACGCTTTTAATATCGTTTTTCATATTT-TTCT-GAATTAATTTC
* * * * *
10398 TAATTAAATTGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTAGCTAAGA
63 TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTAGCTGAGA
* * * * *
10463 TTTGGTTAGATGAATATAGATATTTCAAGGGATGTTGCTACTAAAAATCATGCAACACTAACCCG
128 TTTGATTAGATGAATATAGATATTTCAA-GGA-GTTGGTGCCAAAAATCATGCAAAACTAACCCG
*
10528 GAGCCCCAGAACGCGTTTTTAGCCAAAAAAAAAAACCGTGATCGTACACGATTTCGGCTAAAATT
191 GAGCCCCAGAACGCGTTTTTAGCCAAAAAAAAAAACCGTGATAGTACACGATTTCGGCTAAAATT
* *** * * * * *
10593 TTGCAAAAATTGACCAGAAATATTTTTCC-TCCATTTTTAGCCA-CAATACTCATATAATATATA
256 TTGAAAAAAAAAACCAGAAAAATTTTTCCGTCAATTTTT-GCCATAAATAATCATA-AA-ACATA
*
10656 TATATATATATATAAAATTAAAAG
318 TACATA-AT-T-TAAAATTAAAAG
*
10680 CCTAAAAGATTGGAGGATTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTTATTTT
1 ---AAAAGATTGGAGGATTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAA-TTAATTT
* * * *
10745 CTAATTAAATCGAAACAAGATTCAGATTCTCGTAAAAACAAATCCTTAAATTGAATGTGGGTGAG
62 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTAGCTGAG
* * **
10810 ATTTCATTAGATGAATATATATATTTCAAGGAGTCTAGGTGCCAAAAATCATGCAAAACTAAGTC
127 ATTTGATTAGATGAATATAGATATTTCAAGGAGT-T-GGTGCCAAAAATCATGCAAAACTAACCC
* * **** * *
10875 GGGGTCCC-GAAACGCGTTTTTAGCC-AAAAACGTGA-CG-GTTAGTACACGATTTTGGCTAAAA
190 GGAGCCCCAG-AACGCGTTTTTAGCCAAAAAAAAAAACCGTGATAGTACACGATTTCGGCTAAAA
*
10936 TTTTGTAAAAAAAAAAAACCCA-AAAAATTTTTCCGTCAATTTTTGGCATAAATAATCATAAAAC
254 TTTTG---AAAAAAAAAA-CCAGAAAAATTTTTCCGTCAATTTTTGCCATAAATAATCATAAAAC
**
11000 ATATACATAATTTAATGTTAAAAG
315 ATATACATAATTTAAAATTAAAAG
*
11024 ----GATTGGATGACTT-TTCACGCTTTTAATATCG-TTTTCATATTTTTCTGAATTAATTTCTA
1 AAAAGATTGGAGGA-TTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
* * * * *
11083 ATTAAACCGAAACAAGATTGAGATGCTCGTAAAAACAAATTCTTATATTCAATTGTAGCTGATAT
65 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAA-TGTAGCTGAGAT
* * * * * *
11148 TTGATTAGATGGATGTGGATATCTCAATGAGTTTTTGGCGCCAAAAATCATGCAAAACT
129 TTGATTAGATGAATATAGATATTTCAAGGAG---TTGGTGCCAAAAATCATGCAAAACT
11207 TAGA
Statistics
Matches: 442, Mismatches: 66, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
335 55 0.12
336 51 0.12
337 49 0.11
338 3 0.01
339 1 0.00
344 10 0.02
345 27 0.06
346 6 0.01
347 22 0.05
348 161 0.36
349 57 0.13
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (338 bp):
AAAAGATTGGAGGATTCTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAA
TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTAGCTGAGATTT
GATTAGATGAATATAGATATTTCAAGGAGTTGGTGCCAAAAATCATGCAAAACTAACCCGGAGCC
CCAGAACGCGTTTTTAGCCAAAAAAAAAAACCGTGATAGTACACGATTTCGGCTAAAATTTTGAA
AAAAAAAACCAGAAAAATTTTTCCGTCAATTTTTGCCATAAATAATCATAAAACATATACATAAT
TTAAAATTAAAAG
Done.