Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020712.1 Corchorus olitorius cultivar O-4 contig20745, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56029

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--945
334
2.8
331
82
6
1138
35
14
15
34
1.88
970--1024
16
3.4
16
80
9
76
5
16
40
38
1.72
1476--1547
31
2.3
31
75
17
78
61
8
4
26
1.43
5295--5509
107
2.0
107
96
0
394
10
13
25
50
1.74
5493--5584
44
2.1
44
97
0
175
18
21
15
44
1.86
6393--6651
85
3.0
84
88
7
353
31
26
12
29
1.92
6411--6674
89
3.0
89
91
5
398
31
25
12
29
1.93
11740--11838
49
2.0
49
100
0
198
32
18
11
38
1.86
26496--26532
12
3.1
12
88
0
56
43
0
8
48
1.32
26499--26532
14
2.4
14
90
0
59
41
0
8
50
1.34
27905--27962
26
2.3
26
96
3
109
22
27
29
20
1.99
28299--28403
51
2.1
51
83
5
133
19
22
13
44
1.85
29321--29350
15
1.9
16
93
6
53
53
3
0
43
1.17
29568--29647
39
2.1
39
97
0
124
30
2
18
48
1.61
33402--33474
36
2.0
36
91
0
119
20
13
15
50
1.77
36489--36531
5
8.6
5
87
10
61
81
0
18
0
0.69
36996--37039
19
2.3
19
84
7
54
47
9
2
40
1.48
45060--45156
48
2.0
48
88
4
142
22
28
21
26
1.99
53634--55666
323
6.3
322
80
6
2086
36
16
14
32
1.89
53902--55698
642
2.8
633
82
6
2363
36
16
14
32
1.89

Tables:   1

The End!