Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020714.1 Corchorus olitorius cultivar O-4 contig20747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36758

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294--349
28
2.0
28
100
0
112
35
14
25
25
1.93
448--480
2
16.0
2
93
6
57
48
0
3
48
1.17
12995--13044
24
2.1
24
100
0
100
34
12
14
40
1.82
13604--13676
29
2.5
30
81
4
94
35
19
26
19
1.95
15475--15523
15
3.3
15
83
11
64
2
46
0
51
1.12
16393--16554
31
5.3
31
82
2
159
33
25
22
17
1.96
19869--21823
668
3.0
650
83
5
2272
36
16
13
33
1.88
19877--21818
331
5.9
329
80
6
1846
36
16
13
33
1.88
23076--23805
332
2.2
328
83
7
884
36
15
14
33
1.88
24305--24334
15
1.9
16
93
6
53
56
0
0
43
0.99
24294--24359
35
1.9
34
84
9
89
56
0
3
40
1.15
30305--30422
60
2.0
60
83
5
148
38
20
5
35
1.75
34755--35960
322
3.8
318
79
8
1196
33
14
16
35
1.88

Tables:   1

The End!