Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020715.1 Corchorus olitorius cultivar O-4 contig20748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9351
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:3115 original size:2 final size:2
Alignment explanation
Indices: 3108--3139 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
3098 ACTATCTTAC
3108 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3140 GAGTAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3249 original size:19 final size:21
Alignment explanation
Indices: 3217--3256 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
3207 AACGCGTTTA
3217 AATTAAAAAGTAATTA-AAAT
1 AATTAAAAAGTAATTATAAAT
*
3237 AATT-AAAATTAATTATAAAT
1 AATTAAAAAGTAATTATAAAT
3257 TAAAATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (21 bp):
AATTAAAAAGTAATTATAAAT
Found at i:3258 original size:11 final size:10
Alignment explanation
Indices: 3217--3259 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
3207 AACGCGTTTA
*
3217 AATTAAAAAGT
1 AATT-AAAATT
3228 AATTAAAA-T
1 AATTAAAATT
3237 AATTAAAATT
1 AATTAAAATT
3247 AATTATAAATT
1 AATTA-AAATT
3258 AA
1 AA
3260 AATATCAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.30
10 10 0.33
11 11 0.37
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (10 bp):
AATTAAAATT
Found at i:4394 original size:332 final size:331
Alignment explanation
Indices: 3447--4623 Score: 1452
Period size: 332 Copynumber: 3.5 Consensus size: 331
3437 GCCAAAAATT
* ** * * * *
3447 GTGATGGTTAATACACAATTTCGGTTAAAATTTTGCAAAAATTTACCCAAAATAATTT-TCGTAA
1 GTGATGGTTAATACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAA-AATTTCTCCTCA
* * * *
3511 ATTTTTTGCCACGATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAAGGTTTTTCA
65 ATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTTTCA
* * *
3576 CGCTTCTAATATCGATTTTCCTATTTTTTCTGAATTAATTTCTAGTTAAATCGAAACATGATTCA
130 CGCTTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCA
*
3641 GATGGTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGATAT
195 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGATAT
* *
3706 TTCAATGAGTC-TGGCGCCAAAAATCATGCAAAACAGAGCCGGGACCCCGAGACGCGTTTTTTAG
260 TTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACTCCGA-ACGCG-TTTTTAG
*
3770 TCAAAAACT
323 TCAAAAACC
** * * * * * *
3779 GTGATGGTTTGTATACGATTTCGGCTAAAATTTTGTAAAAATTGACACG-AAACTTTCTACTCAA
1 GTGATGGTTAATACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAAATTTCTCCTCAA
** * * *
3843 TTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTCTCAC
66 TTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTTTCAC
* * *
3908 GCTTCTAATATTGTTTTTTTTTCTATTTTTTTCGAATTAATTTCTAATTAAATCGAAAC-TGGAT
131 GCTTCTAATATCG---TTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAT-GAT
* * **
3972 TGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTCGTTAGATAAATATAGA
192 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGA
* * *
4037 TATTCCAATGAGTCTTGGCGCCAAAAATCATGTAAAACTGAGCCGGGACTACAGAACGCGTTTTT
257 TATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACT-CCGAACGCGTTTTT
* *
4102 AGCCAAACACC
321 AGTCAAAAACC
* * *
4113 GTGATAGTTAGTACACGATTTCGACTAAAATTTTGTAAAAATTGACCCGAAAGAATTT-TCCTCA
1 GTGATGGTTAATACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAA-AATTTCTCCTCA
* * * * *
4177 ATTTTTGACCACGATACTCATAAAAAATATATAATTCAACACTAAAAAGATTGAAAGGCTATTCA
65 ATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTTTCA
* * * * *
4242 TGCTTCTAATATCGTTTTTCCTATTTTTTCCGTATTGATTCCTAATTGAATCGAAACATGATTCA
130 CGCTTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCA
* * * *
4307 TATGCTCGTAAAAGCAAATCCTTAAATCCAATGTGGGTAAGATTTGGTTAGATGGATATAGATAT
195 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGATAT
* * * * * *
4372 TTCAATGAGACTTGGCGCCAAAAATCGTGCAAAATTGAGGCGGGGCTCCGAAACGCTTTTTTAGT
260 TTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACTCCG-AACGCGTTTTTAGT
4437 CAAAAACC
324 CAAAAACC
* * * *
4445 GTGATGGTTAATGCACGATTTC-AGCTAAAATGTTGCCAAAATTGACCCGAGAAATTTCTCCTCA
1 GTGATGGTTAATACACGATTTCGA-CTAAAATTTTGCAAAAATTGACCCGAAAAATTTCTCCTCA
* * * * * * *
4509 ATTTTGGGCCACAATACTAATAAAAAATATATAACTCAATGCCAAAAAGACTGAAGGGTTTTTCA
65 ATTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTTTCA
* * * *
4574 TGCTTCTAATATTGCTTTTCCTACCTTTTTCCGAATTGAA--TCTAATTAAA
130 CGCTTCTAATATCGTTTTTCCTA-TTTTTTCCGAATT-AATTTCTAATTAAA
4624 AAAAATTATA
Statistics
Matches: 719, Mismatches: 111, Indels: 30
0.84 0.13 0.03
Matches are distributed among these distances:
330 4 0.01
331 82 0.11
332 330 0.46
333 13 0.02
334 172 0.24
335 111 0.15
336 7 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (331 bp):
GTGATGGTTAATACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAAATTTCTCCTCAA
TTTTTGGCCACGATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAAGGCTTTTCAC
GCTTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAG
ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGATATT
TCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACTCCGAACGCGTTTTTAGTCA
AAAACC
Found at i:4907 original size:15 final size:15
Alignment explanation
Indices: 4887--4919 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
4877 CCAAACAAGG
4887 AGTCCAAGTCCAATC
1 AGTCCAAGTCCAATC
4902 AGTCCAAGTCCAATC
1 AGTCCAAGTCCAATC
4917 AGT
1 AGT
4920 AATTATGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.21
Consensus pattern (15 bp):
AGTCCAAGTCCAATC
Found at i:5695 original size:15 final size:16
Alignment explanation
Indices: 5670--5699 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
5660 AATAATTATT
5670 TTTAGATTATAATATA
1 TTTAGATTATAATATA
5686 TTTA-ATTATAATAT
1 TTTAGATTATAATAT
5700 TATTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAGATTATAATATA
Found at i:7225 original size:337 final size:328
Alignment explanation
Indices: 6069--7986 Score: 1329
Period size: 338 Copynumber: 5.8 Consensus size: 328
6059 ACTTTACATT
* ** * * *
6069 ATCTAACCAAATCTCGGCAACATTGGATTTAAGAATTTATTTTTACGAGCATCTGAATCTTGTTT
1 ATCTAATCAAATCTCAACCACATTAGATTAAAG-ATTT-TTTTTACGAGCATCTGAATCTTGTTT
* * * *
6134 CGATTTAATTAGAAATTAATTTAGAAAAAATAAGAAATATGATATTAAAAGCGTAAAAAGCCCTC
64 CGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCAAAAGCCCTC
*
6199 CAATCTTTTTGGCGTTGAATTATATATTTTTATT-AGTATTTTAACCAAAAATTGA-GAAGAAAT
129 CAATATTTTTGGCGTTGAATTATATATTTTTATTGAGTATTTTAACCAAAAATTGAGGAA-AAAT
*
6262 CTTTCGT-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACAAACCATCACGGTTTTT
193 CTTTCCTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACT--C--ACCATCACGGTTTTT
* * * * *
6326 GTCTAAAAACACGTTCCGGGG-ACCTGGCTCAATTTTGTATGATTTTTGGCTCCGAGACTACTTG
254 GGCTAAAAACACGTTTCGGGGCACC-GGCTCAATTTTGCATGATTTTTGGCACC-A-AC-ACTCG
6390 AAATATCTATAATATTC
315 AAATATC--T-ATATTC
* * * *
6407 ATTTAATCAAATCTCACCCACATTAGATTAAAGGATTTTTCTTTACGAGAATCTGAATTTTGTTT
1 ATCTAATCAAATCTCAACCACATTAGATTAAA-GATTTTT-TTTACGAGCATCTGAATCTTGTTT
* * *
6472 CGATTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAA-CGTCAAAATCCCT
64 CGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTA-AAAGCGTCAAAAGCCCT
* * * * * *
6536 TCAATCTTTTTGGCGTTGAGTTATATATTTTT-TTGAGTATTCTAGCCAAAAATTGAGGAAATAT
128 CCAATATTTTTGGCGTTGAATTATATATTTTTATTGAGTATTTTAACCAAAAATTGAGGAAAAAT
* ** * * * ** *
6600 CTTT-CGGGTCAATTTTTATAAAATTTTAGCCGAAATCGTGTAATAACCATAATAGTTTTTGGAT
193 CTTTCCTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTCACCATCACGGTTTTTGGCT
* * * * * * * *
6664 AAAAA-ACATTTTGTGGC-CTCGGCTCAATTTTGCATGATTTTTTGCGCCAAGACTCCTTAGGAT
258 AAAAACACGTTTCGGGGCAC-CGGCTCAATTTTGCATGATTTTTGGCACCAACACT-C-GA-AAT
**
6727 ATCTATACCC
319 ATCTATATTC
* * * * * *
6737 ATCTATTCAAATCACAACCACATTGGATTAAAAAATATTTTTTT-CAAGCATCTAAATCTTGTTT
1 ATCTAATCAAATCTCAACCACATTAGATT-AAAGAT-TTTTTTTACGAGCATCTGAATCTTGTTT
* * **
6801 CGATTTAATTAGAAATTGATACTT---AAAAATATGAAAAACGATATTAAAAGCGT-ATACAGTA
64 CGATTTAATTAGAAATT-A-ATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCA-AAAGCC
* * *
6862 CTCCAATATTTTTGCCGTTAAATTATATATATATATATATATATTAGGAGTATTTTATCCAAAAA
126 CTCCAATATTTTTGGCGTT-GA--AT-TATATAT-T-T-T-TATT--GAGTATTTTAACCAAAAA
* * *
6927 TTGAGGAAAAAT-TTTCCTGGT-TATATTTTGCAAAATTTTAGCCAAAATCGTATACTCACCATC
181 TTGAGGAAAAATCTTTCCTGGTCAAT-TTTTGCAAAATTTTAGCCGAAATCGTGTACTCACCATC
* ** *
6990 ACGGTTTTTGGCTAAAAACGCGTTTCGGGGCACCAACTCAGTTTTGCATGATTTTTGGCACCAAC
245 ACGGTTTTTGGCTAAAAACACGTTTCGGGGCACCGGCTCAATTTTGCATGATTTTTGGCACCAAC
*
7055 ACTCGAAATAACTATATTC
310 ACTCGAAATATCTATATTC
* * * * * * *
7074 ATCTAATAAAATCTTAGCCACATTACATTTAAGATTTTTTTAACGAGCATCCGAAT-TATGTTTC
1 ATCTAATCAAATCTCAACCACATTAGATTAAAGATTTTTTTTACGAGCATCTGAATCT-TGTTTC
* * *
7138 GATTTAATTTGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCATCAAAAGCCCTTC
65 GATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCAAAAGCCCTCC
* * ** * *
7203 AATATTTTTGGTGTTGAATTATATATTTTT-TATGAATATTATGGA-TAAAAATTGAGAAAAAAT
130 AATATTTTTGGCGTTGAATTATATATTTTTAT-TGAGTATT-TTAACCAAAAATTGAGGAAAAAT
* * * * * * *
7266 CTTT-C-GGATCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAATCATCCCGGGTTCTGGC
193 CTTTCCTGG-TCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTCACCATCACGGTTTTTGGC
* * * *** ** * * * *
7329 TAAAAACGCGTTCCGAGGC-CCATTTCAGA-TTTAAATGATTTTTTGCGCCGAGACTCCTGGAAA
257 TAAAAACACGTTTCGGGGCACCGGCTCA-ATTTTGCATGATTTTTGGCACC-A-AC-ACTCGAAA
*
7392 T-GCATATATTC
318 TATC-TATATTC
* * * * * *
7403 ATCTAACCAAATCCCAA-C-C-----ATT---G--TTTTTATA--AGCATTTGAATCATGTTTCT
1 ATCTAATCAAATCTCAACCACATTAGATTAAAGATTTTTTTTACGAGCATCTGAATCTTGTTTCG
* * * * * * * * * *
7454 TTTTAATTATAAATTAA-TTCGGAAAAATAAGAAAAACGGTATTAGAAGCATGAAAAGCCCTTCA
66 ATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCAAAAGCCCTCCA
* * * * * * *
7518 ATCTTTTTGGAGTTGAATTATATATTTTTA-TGAGTGTTGTGACTAAAAATTGAGGAAAAATATT
131 ATATTTTTGGCGTTGAATTATATATTTTTATTGAGTATTTTAACCAAAAATTGAGGAAAAATCTT
* * * * * ***** *
7582 T-C-GCGTCATTTTTTGAAAAATATTAGCCGAAATCGTGCAACATCACGCTTTTTTTTTCTTTTT
196 TCCTG-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTG-TAC-TCAC-C-ATCACGGT-TTTTG
* * * * * * * * *
7645 GCTAAAAACGA-GTTCCAGGACCCCGGGTCAGTATTGCATGATTTTTGGCGCCAAGACTCCTTGA
255 GCTAAAAAC-ACGTTTCGGGGCACCGGCTCAATTTTGCATGATTTTTGGCACCAACACT-C--GA
* * *
7709 ACTATCCATATTA
316 AATATCTATATTC
* * * * * * *
7722 AACTAATCAAATCTCAGCCACATTGGATTTAAAGCTTTGTTTGTACGAGCATCTAAATCTTCTTT
1 ATCTAATCAAATCTCAACCACATTAGA-TTAAAGATTT-TTTTTACGAGCATCTGAATCTTGTTT
* * * * * * * ** *
7787 CGATTTAATTAGAAATTAATTTGGAAATAGTAGGAAAAACTATATTAGAAGCGTAAAAAATCCTT
64 CGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCAAAAGCCCTC
* * * * *
7852 CAATATTTTTGGCGTAGAATTATAT-TATTTT-TTAAG-ATGATTTAGCAAAAAATTGAGGAAAT
129 CAATATTTTTGGCGTTGAATTATATAT-TTTTATTGAGTAT--TTTAACCAAAAATTGAGGAAAA
* * * * *
7914 ATCTTTCC-GGTCATTTTTTTTGCAAAATTTTAGTCGAAATCGTGTAATAATCATCACGGTTTTT
191 ATCTTTCCTGGTCA--ATTTTTGCAAAATTTTAGCCGAAATCGTGTACTCACCATCACGGTTTTT
7978 GGCTAAAAA
254 GGCTAAAAA
7987 TGCGTTTAGG
Statistics
Matches: 1234, Mismatches: 258, Indels: 180
0.74 0.15 0.11
Matches are distributed among these distances:
312 2 0.00
313 56 0.05
314 70 0.06
315 31 0.03
316 3 0.00
317 8 0.01
318 20 0.02
319 44 0.04
320 2 0.00
321 1 0.00
322 3 0.00
326 25 0.02
327 90 0.07
328 53 0.04
329 62 0.05
330 39 0.03
331 14 0.01
332 12 0.01
333 51 0.04
334 38 0.03
335 43 0.03
336 101 0.08
337 112 0.09
338 205 0.17
339 111 0.09
340 37 0.03
341 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (328 bp):
ATCTAATCAAATCTCAACCACATTAGATTAAAGATTTTTTTTACGAGCATCTGAATCTTGTTTCG
ATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAACGATATTAAAAGCGTCAAAAGCCCTCCA
ATATTTTTGGCGTTGAATTATATATTTTTATTGAGTATTTTAACCAAAAATTGAGGAAAAATCTT
TCCTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTCACCATCACGGTTTTTGGCTAAA
AACACGTTTCGGGGCACCGGCTCAATTTTGCATGATTTTTGGCACCAACACTCGAAATATCTATA
TTC
Found at i:7377 original size:666 final size:663
Alignment explanation
Indices: 6088--7386 Score: 1538
Period size: 666 Copynumber: 1.9 Consensus size: 663
6078 AATCTCGGCA
* * * *
6088 ACATTGGATTTAAGAATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
1 ACATTGGATTAAAAAATTTATTTTTACAAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAA
* * * * * * *
6153 TTTAGAAAAAATAAGAAATATGATATTAAAAGCGTAAAAAGCCCTCCAATCTTTTTGGCGTTGAA
66 CTT--AAAAAATAAGAAAAACGATATTAAAAGCGTAAAAAGCACTCCAATATTTTTGCCGTTAAA
*
6218 TTATATATTTTTATTAGTATTTTAACCAAAAATTGAGAAGAAATCTTTCGTGTCAATTTTTGCAA
129 TTATATATTTTTATTAGTATTTTAACCAAAAATTGAGAAGAAATCTTTCCTGTCAATTTTTGCAA
* * *
6283 AATTTTAGCCGAAATCGTGTACTAACAAACCATCACGGTTTTTGTCTAAAAACACGTTCCGGGGA
194 AATTTTAGCCAAAATCGTATACT-AC-AACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGA
** * * * * *
6348 CCTGGCTCAATTTTGTATGATTTTTGGCTCCGAGACTACTTGAAATATCTATAATATTCATTTAA
257 CCTAACTCAATTTTGCATGATTTTTGGCACCGAGACTACTCGAAATAAC-ATAATATTCATCTAA
* * * * *
6413 TCAAATCTCACCCACATTAGATTAAAGGATTTTTCTTTACGAGAATCTGAATTTTGTTTCGATTT
321 TAAAATCTCACCCACATTACATTAAAGGATTTTTCTTAACGAGAATCCGAATTATGTTTCGATTT
* * * *
6478 AATTAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAACGTCAAAATCCCTTCAATCT
386 AATTAGAAATTAATTTAGAAAAAATAGGAAAAACGATATTAGAAACATCAAAAGCCCTTCAATAT
* * * * * * *
6543 TTTTGGCGTTGAGTTATATATTTTTTTGAGTATTCTAGCCAAAAATTGAGGAAATATCTTTCGGG
451 TTTTGGCGTTGAATTATATATTTTTTTGAATATTATAGACAAAAATTGAGAAAAAATCTTTCGGA
* * * *
6608 TCAATTTTTATAAAATTTTAGCCGAAATCGTGTAATAACCATAATAGTTTTTGGATAAAAAACAT
516 TCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAACCATAACAGGTTCTGGATAAAAAACAT
** * * **
6673 TTTGTGGCCTCGGCTCAATTTTGCATGATTTTTTGCGCCAAGACTCCTTAGGATATCTATACCCA
581 TCCGAGGCCTCAGCTCAATTTTAAATGATTTTTTGCGCCAAGACTCCTTAGGATATCTATACCCA
6738 TCTATTCAAATCACAACC
646 TCTATTCAAATCACAACC
6756 ACATTGGATTAAAAAATATT-TTTTT-CAAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTG
1 ACATTGGATTAAAAAAT-TTATTTTTACAAGCATCTAAATCTTGTTTCGATTTAATTAGAAATT-
* * * *
6819 ATACTT-AAAAATATGAAAAACGATATTAAAAGCGTATACAGTACTCCAATATTTTTGCCGTTAA
64 A-ACTTAAAAAATAAGAAAAACGATATTAAAAGCGTAAAAAGCACTCCAATATTTTTGCCGTT-A
*
6883 ATTATATATATATATATATATATTAGGAGTATTTTATCCAAAAATTGAGGAA-AAAT-TTTCCTG
127 A--AT-TATATAT-T-T-T-TATT---AGTATTTTAACCAAAAATTGA-GAAGAAATCTTTCCT-
*
6946 GT-TATATTTTGCAAAATTTTAGCCAAAATCGTATACT-C-ACCATCACGGTTTTTGGCTAAAAA
180 GTCAAT-TTTTGCAAAATTTTAGCCAAAATCGTATACTACAACCATCACGGTTTTTGGCTAAAAA
* * *
7008 CGCGTTTCGGGGCACC-AACTCAGTTTTGCATGATTTTTGGCACC-A-AC-ACTCGAAATAAC-T
244 CACGTTCCGGGG-ACCTAACTCAATTTTGCATGATTTTTGGCACCGAGACTACTCGAAATAACAT
* * * *
7068 -ATATTCATCTAATAAAATCTTAGCCACATTACATTTAA-GATTTTT-TTAACGAGCATCCGAAT
308 AATATTCATCTAATAAAATCTCACCCACATTACATTAAAGGATTTTTCTTAACGAGAATCCGAAT
* *
7130 TATGTTTCGATTTAATTTGAAATTAATTTAGAAAAAATATGAAAAACGATATTA-AAAGCATCAA
373 TATGTTTCGATTTAATTAGAAATTAATTTAGAAAAAATAGGAAAAACGATATTAGAAA-CATCAA
* * *
7194 AAGCCCTTCAATATTTTTGGTGTTGAATTATATATTTTTTATGAATATTATGGATAAAAATTGAG
437 AAGCCCTTCAATATTTTTGGCGTTGAATTATATATTTTTT-TGAATATTATAGACAAAAATTGAG
* ** *
7259 AAAAAATCTTTCGGATCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAATCATCCCGGGTT
501 AAAAAATCTTTCGGATCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAACCATAACAGGTT
* * * ** *
7324 CTGGCTAAAAACGCGTTCCGAGGCC-CATTTCAGA-TTTAAATGATTTTTTGCGCCGAGACTCCT
566 CTGGATAAAAA-ACATTCCGAGGCCTCAGCTCA-ATTTTAAATGATTTTTTGCGCCAAGACTCCT
7387 GGAAATGCAT
Statistics
Matches: 533, Mismatches: 76, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
664 3 0.01
665 105 0.20
666 167 0.31
667 77 0.14
668 22 0.04
669 7 0.01
670 17 0.03
671 3 0.01
672 2 0.00
673 57 0.11
674 7 0.01
675 1 0.00
676 7 0.01
677 55 0.10
678 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (663 bp):
ACATTGGATTAAAAAATTTATTTTTACAAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAA
CTTAAAAAATAAGAAAAACGATATTAAAAGCGTAAAAAGCACTCCAATATTTTTGCCGTTAAATT
ATATATTTTTATTAGTATTTTAACCAAAAATTGAGAAGAAATCTTTCCTGTCAATTTTTGCAAAA
TTTTAGCCAAAATCGTATACTACAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGACCTA
ACTCAATTTTGCATGATTTTTGGCACCGAGACTACTCGAAATAACATAATATTCATCTAATAAAA
TCTCACCCACATTACATTAAAGGATTTTTCTTAACGAGAATCCGAATTATGTTTCGATTTAATTA
GAAATTAATTTAGAAAAAATAGGAAAAACGATATTAGAAACATCAAAAGCCCTTCAATATTTTTG
GCGTTGAATTATATATTTTTTTGAATATTATAGACAAAAATTGAGAAAAAATCTTTCGGATCAAT
TTTTACAAAATTTTAGCCGAAATCGTGTAATAACCATAACAGGTTCTGGATAAAAAACATTCCGA
GGCCTCAGCTCAATTTTAAATGATTTTTTGCGCCAAGACTCCTTAGGATATCTATACCCATCTAT
TCAAATCACAACC
Done.