Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020717.1 Corchorus olitorius cultivar O-4 contig20750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25841

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--805
331
2.4
330
82
5
917
32
14
15
37
1.88
5973--5997
2
12.5
2
100
0
50
48
0
0
52
1.00
5146--7996
333
8.6
332
74
11
1888
34
14
15
36
1.87
8298--9578
332
3.8
328
77
8
963
32
14
15
37
1.88
8005--9539
315
4.7
326
77
9
1200
32
14
15
37
1.88
10255--10317
31
2.0
31
100
0
126
31
20
15
31
1.94
11797--11875
31
2.5
31
80
15
108
35
20
12
31
1.90
24138--24183
24
1.9
24
86
0
65
26
17
13
43
1.85
24852--24899
23
2.1
23
96
0
87
64
4
6
25
1.35
25685--25715
2
15.5
2
100
0
62
51
0
0
48
1.00
25757--25798
20
2.1
20
86
0
57
59
14
7
19
1.57

Tables:   1

The End!