Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002072.1 Corchorus olitorius cultivar O-4 contig02072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:658 original size:15 final size:16

Alignment explanation


    Indices: 638--676  Score: 53
    Period size: 18  Copynumber: 2.4  Consensus size: 16

        628 TAAAAGGGCA

                            
        638 GATGAA-AATAAACAT
          1 GATGAACAATAAACAT

                              
        653 GATGAAGCCAATAAACAT
          1 GATGAA--CAATAAACAT

                  
        671 GATGAA
          1 GATGAA

        677 GCCCAAGTCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    6  0.29
  18   15  0.71

ACGTcount: A:0.54, C:0.10, G:0.18, T:0.18


Consensus pattern (16 bp):   
GATGAACAATAAACAT

Found at i:665 original size:18 final size:18

Alignment explanation


    Indices: 644--679  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        634 GGCAGATGAA

                              
        644 AATAAACATGATGAAGCC
          1 AATAAACATGATGAAGCC

                              
        662 AATAAACATGATGAAGCC
          1 AATAAACATGATGAAGCC

        680 CAAGTCCACG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17


Consensus pattern (18 bp):   
AATAAACATGATGAAGCC
Done.