Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020720.1 Corchorus olitorius cultivar O-4 contig20753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106056

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
250--278
14
2.0
15
93
6
51
27
0
24
48
1.51
473--521
20
2.6
18
81
12
71
8
40
40
10
1.69
497--560
33
1.9
33
87
0
92
7
39
39
14
1.74
971--1029
30
1.9
32
86
6
86
38
15
16
28
1.89
20162--20195
13
2.7
13
90
4
52
79
2
5
11
1.02
24887--24915
10
3.0
10
95
5
51
6
41
0
51
1.28
25664--25771
38
2.8
38
94
0
189
41
17
12
27
1.86
26268--26302
12
2.9
12
84
16
54
28
22
48
0
1.51
29061--29172
30
3.7
30
96
0
197
26
42
2
27
1.69
29085--29166
15
5.2
18
63
31
62
25
45
3
25
1.70
29170--29229
21
2.9
21
97
0
111
25
36
20
18
1.94
29302--29344
21
2.0
21
90
0
68
32
41
6
18
1.77
30378--30443
29
2.2
29
84
10
80
21
16
15
46
1.83
64889--64923
18
1.9
18
94
0
61
57
0
0
42
0.99
64894--64945
25
2.0
25
92
3
86
50
0
0
50
1.00
65630--65790
70
2.3
70
100
0
322
22
8
13
55
1.65
73900--73933
7
4.7
7
88
3
50
17
23
17
41
1.90
77020--77095
32
2.4
32
95
0
134
26
25
26
22
2.00
77020--77104
32
2.7
32
90
0
107
27
25
25
21
1.99
79757--79788
12
2.7
12
95
0
55
53
28
15
3
1.57
82546--82570
12
2.1
12
100
0
50
44
8
8
40
1.63
85498--85828
178
1.9
179
89
0
520
41
11
17
29
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88371--88404
17
2.0
17
100
0
68
17
11
23
47
1.81
89489--89554
25
2.7
23
76
15
62
0
34
4
60
1.17
90656--90691
17
2.1
17
100
0
72
52
11
0
36
1.37
91111--91155
21
2.1
21
84
8
56
15
31
13
40
1.86
96053--96112
19
2.8
22
80
17
81
40
15
11
33
1.83
99448--99487
19
2.2
18
86
4
53
55
5
2
37
1.35
101859--101902
23
1.9
23
85
0
61
50
18
13
18
1.79
102365--102436
23
3.2
22
69
25
53
58
9
1
30
1.39
102360--102396
13
2.8
14
80
12
51
62
10
0
27
1.28
102786--102812
11
2.5
11
100
0
54
85
7
0
7
0.75
103090--103114
13
1.9
13
100
0
50
36
0
0
64
0.94
105787--105818
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!