Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020722.1 Corchorus olitorius cultivar O-4 contig20755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64053

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--124
19
2.1
18
85
14
51
52
10
5
31
1.58
214--242
13
2.1
14
93
6
51
75
0
17
6
1.01
30110--30184
28
2.7
27
84
10
89
28
18
12
41
1.86
30110--30196
28
3.1
26
81
15
86
27
19
12
40
1.88
32405--32443
21
1.9
20
84
5
51
53
0
0
46
1.00
32589--32634
22
2.1
22
87
0
65
63
6
8
21
1.46
35680--35741
29
2.1
29
87
0
88
22
19
8
50
1.74
37024--37089
31
2.1
31
86
5
89
51
7
4
36
1.51
37468--37502
16
2.2
16
100
0
70
28
5
22
42
1.76
38860--38892
3
11.0
3
100
0
66
33
0
0
66
0.92
40749--40774
2
13.0
2
100
0
52
50
0
0
50
1.00
43236--43274
17
2.3
17
90
0
60
28
10
5
56
1.54
43245--43281
17
2.2
17
100
0
74
29
5
5
59
1.42
43170--43362
98
1.9
99
91
2
316
27
11
12
48
1.76
43262--43460
81
2.4
81
88
0
281
30
11
14
44
1.79
43741--43769
7
4.3
7
91
8
51
0
13
0
86
0.58
43741--43769
13
2.1
14
93
6
51
0
13
0
86
0.58
46613--46723
59
1.9
58
92
1
186
34
23
11
30
1.91
47693--47732
19
2.0
21
85
9
57
35
15
0
50
1.44
48390--48447
22
2.7
21
82
12
64
58
1
0
39
1.08
48378--48445
7
9.6
7
72
20
52
54
1
0
44
1.09
48411--48458
18
2.8
17
84
12
62
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48411--48459
25
2.0
25
91
0
80
65
0
0
34
0.93
48525--48549
13
1.9
13
100
0
50
40
20
8
32
1.81
48554--48578
12
2.1
12
100
0
50
24
20
16
40
1.91
49650--49696
25
1.9
24
86
4
67
27
6
17
48
1.71
50584--50615
6
5.3
6
100
0
64
15
0
0
84
0.63
51030--51090
28
2.1
29
84
6
79
67
9
18
4
1.37
51881--52070
99
1.9
99
96
1
353
29
16
19
34
1.94
52475--52501
14
1.9
14
100
0
54
22
29
0
48
1.51
55296--55335
21
2.1
19
86
13
55
20
27
15
37
1.92
55493--55553
30
1.9
32
84
15
83
14
13
1
70
1.24
59350--59456
33
3.2
32
73
16
92
15
9
46
28
1.77
59370--59482
33
3.3
33
79
7
136
15
10
48
24
1.77
61956--62094
31
4.5
31
82
0
161
19
23
23
33
1.97
62199--62273
31
2.4
31
90
0
123
38
16
24
21
1.92

Tables:   1

The End!