Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020724.1 Corchorus olitorius cultivar O-4 contig20757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156913
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:1951 original size:2 final size:2
Alignment explanation
Indices: 1940--1976 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
1930 ACATGAATAA
1940 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1977 TTCTCACTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:4077 original size:48 final size:48
Alignment explanation
Indices: 4006--4103 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
3996 ACTCGGACAC
4006 AAACTCAGTTTTTAAAAATTCAAAACAAAATAAAAACTACCCATTTTA
1 AAACTCAGTTTTTAAAAATTCAAAACAAAATAAAAACTACCCATTTTA
* * *
4054 AAACTCAGTTTTTTAAAATTCAAAACAAAATAAAAGCTATCCATTTTA
1 AAACTCAGTTTTTAAAAATTCAAAACAAAATAAAAACTACCCATTTTA
4102 AA
1 AA
4104 TAAAACTACC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (48 bp):
AAACTCAGTTTTTAAAAATTCAAAACAAAATAAAAACTACCCATTTTA
Found at i:11861 original size:24 final size:24
Alignment explanation
Indices: 11829--11874 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
11819 ATTAGATTAG
11829 TGGAAAGGAAAGATGGAATCATGC
1 TGGAAAGGAAAGATGGAATCATGC
11853 TGGAAAGGAAAGATGGAATCAT
1 TGGAAAGGAAAGATGGAATCAT
11875 AGTTTAGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17
Consensus pattern (24 bp):
TGGAAAGGAAAGATGGAATCATGC
Found at i:12770 original size:54 final size:54
Alignment explanation
Indices: 12687--12793 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
12677 GAAGGAAAAA
*
12687 AAAAGGAAAGTTGGTTTAGCAGGACACCAAAAAAGAACTGCTAAAGTTGGTTTC
1 AAAAGGAAAGTTGGTTTAGCAGGAAACCAAAAAAGAACTGCTAAAGTTGGTTTC
12741 AAAAGGAAAGTTGGTTTAGCAGGAAACCAAAAAAGAACTGCTAAAGTTGGTTT
1 AAAAGGAAAGTTGGTTTAGCAGGAAACCAAAAAAGAACTGCTAAAGTTGGTTT
12794 AGCAGGAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (54 bp):
AAAAGGAAAGTTGGTTTAGCAGGAAACCAAAAAAGAACTGCTAAAGTTGGTTTC
Found at i:12794 original size:36 final size:36
Alignment explanation
Indices: 12747--12820 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
12737 TTTCAAAAGG
*
12747 AAAGTTGGTTTAGCAGGAAACCAAAAAAGAACTGCT
1 AAAGTTGGTTTAGCAGGAAACAAAAAAAGAACTGCT
*
12783 AAAGTTGGTTTAGCAGGAAACAAAAAAAGAATTGCT
1 AAAGTTGGTTTAGCAGGAAACAAAAAAAGAACTGCT
12819 AA
1 AA
12821 TTTTTTGTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.20
Consensus pattern (36 bp):
AAAGTTGGTTTAGCAGGAAACAAAAAAAGAACTGCT
Found at i:13268 original size:18 final size:18
Alignment explanation
Indices: 13245--13280 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13235 ATCAACCCAA
*
13245 TCCCCAATTTCCAAATTT
1 TCCCCAATCTCCAAATTT
*
13263 TCCCCAATCTCCAGATTT
1 TCCCCAATCTCCAAATTT
13281 CCAAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.36, G:0.03, T:0.36
Consensus pattern (18 bp):
TCCCCAATCTCCAAATTT
Found at i:13383 original size:22 final size:22
Alignment explanation
Indices: 13355--13401 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
13345 CAACAACACA
*
13355 ATCACGCCCAAGCCTTTTTCTC
1 ATCACGCCCAAGCCTTCTTCTC
*
13377 ATCACGCCCGAGCCTTCTTCTC
1 ATCACGCCCAAGCCTTCTTCTC
13399 ATC
1 ATC
13402 CTTCCAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.43, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACGCCCAAGCCTTCTTCTC
Found at i:14474 original size:39 final size:40
Alignment explanation
Indices: 14430--14531 Score: 172
Period size: 39 Copynumber: 2.6 Consensus size: 40
14420 ATGAGAATTC
*
14430 TGTTTTGAAATCTTTGAATGTTGATTCTGTT-CCTGATTT
1 TGTTTTGAAATCTTTGAATGTTGATTATGTTCCCTGATTT
14469 TGTTTTGAAATCTTTGAATGTTGATTATGTTCCCTGATTT
1 TGTTTTGAAATCTTTGAATGTTGATTATGTTCCCTGATTT
14509 TGTTTTGAAATC-TTGTAATGTTG
1 TGTTTTGAAATCTTTG-AATGTTG
14532 CTTTTGTTTG
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
39 33 0.55
40 27 0.45
ACGTcount: A:0.20, C:0.09, G:0.19, T:0.53
Consensus pattern (40 bp):
TGTTTTGAAATCTTTGAATGTTGATTATGTTCCCTGATTT
Found at i:15177 original size:45 final size:45
Alignment explanation
Indices: 15113--15249 Score: 258
Period size: 45 Copynumber: 3.1 Consensus size: 45
15103 TCGTACTAAT
15113 TATGTCTTTTTTT-ATACTAATCTATTATTATGGATATGTAAAAC
1 TATGTCTTTTTTTGATACTAATCTATTATTATGGATATGTAAAAC
15157 TATGTCTTTTTTTGATACTAATCTATTATTATGGATATGTAAAAC
1 TATGTCTTTTTTTGATACTAATCTATTATTATGGATATGTAAAAC
*
15202 TATGTCTTTTTTGGATACTAATCTATTATTATGGATATGTAAAAC
1 TATGTCTTTTTTTGATACTAATCTATTATTATGGATATGTAAAAC
15247 TAT
1 TAT
15250 TATTATGTTG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
44 13 0.14
45 78 0.86
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (45 bp):
TATGTCTTTTTTTGATACTAATCTATTATTATGGATATGTAAAAC
Found at i:16589 original size:35 final size:35
Alignment explanation
Indices: 16550--16618 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
16540 AAGAAAGGAG
16550 GAGAGGAAGCCATGATGGTATTAAACATTTTTTTT
1 GAGAGGAAGCCATGATGGTATTAAACATTTTTTTT
16585 GAGAGGAAGCCATGATGGTATTAAACATTTTTTT
1 GAGAGGAAGCCATGATGGTATTAAACATTTTTTT
16619 CTTTGTATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (35 bp):
GAGAGGAAGCCATGATGGTATTAAACATTTTTTTT
Found at i:34076 original size:19 final size:18
Alignment explanation
Indices: 34052--34089 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
34042 TACTTTTACC
34052 AAAATA-ATTTCAATAAAAT
1 AAAATATATTT-AA-AAAAT
34071 AAAATATATTTAAAAAAT
1 AAAATATATTTAAAAAAT
34089 A
1 A
34090 TTTAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAATATATTTAAAAAAT
Found at i:34266 original size:251 final size:252
Alignment explanation
Indices: 33822--34301 Score: 800
Period size: 251 Copynumber: 1.9 Consensus size: 252
33812 TTACAACAAT
*
33822 ATATATTAAAAAAATATTTAATTTTTATTCCACGTGTCACCTGCCACGTCAGCAAAAAAAGACGG
1 ATATATTAAAAAAATATTTAATTTTTATTCCACGTGTCACCTGCCACATCAGCAAAAAAAGACGG
* ** ** *
33887 TGTTATTGCCATGTCAGCATATTTGACGGATCTGTCACGGCATGCTAACGTGAGGGACCTCGGGT
66 TGTTAGTGCCACATCAGCATATTTGACGGATCTGTCACGGCACACTAACGTGAGGGACCTCAGGT
* *
33952 GATAGGTTCTGATAGTAGAGGGACGAATTTGTAGAAAAAAAAGTACAGGGACCAAAATCAACATT
131 GATAGATTCTAATAGTAGAGGGACGAATTTGTAGAAAAAAAAGTACAGGGACCAAAATCAACATT
* *
34017 TCGTATAGTACAGGGACCTCCCGGGTACTTTTACCAAAATAATTTCAATAAAATAAA
196 TCGTATAATACAGGGACCTCCCGGATACTTTTACCAAAATAATTTCAATAAAATAAA
*
34074 ATATATTTAAAAAATATTTAATTTTTATTCCACGTGTCACCTGCCACATCAGC-AAAAAAGACGG
1 ATATATTAAAAAAATATTTAATTTTTATTCCACGTGTCACCTGCCACATCAGCAAAAAAAGACGG
* * *
34138 TGTTAGTGCCACATCAGCATATTTGATGGGTCTGTCACGGCACACTAACGTGAGGGATCTCAGGT
66 TGTTAGTGCCACATCAGCATATTTGACGGATCTGTCACGGCACACTAACGTGAGGGACCTCAGGT
* *
34203 GATAGATTCTAATAGTAGAGGGATGAATTTGTAGAAAAAAAAGTATAGGGACCAAAATCAACATT
131 GATAGATTCTAATAGTAGAGGGACGAATTTGTAGAAAAAAAAGTACAGGGACCAAAATCAACATT
34268 TCGTATAATACAGGGACCTCCCGGATACTTTTAC
196 TCGTATAATACAGGGACCTCCCGGATACTTTTAC
34302 TGACATTTAA
Statistics
Matches: 211, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
251 160 0.76
252 51 0.24
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (252 bp):
ATATATTAAAAAAATATTTAATTTTTATTCCACGTGTCACCTGCCACATCAGCAAAAAAAGACGG
TGTTAGTGCCACATCAGCATATTTGACGGATCTGTCACGGCACACTAACGTGAGGGACCTCAGGT
GATAGATTCTAATAGTAGAGGGACGAATTTGTAGAAAAAAAAGTACAGGGACCAAAATCAACATT
TCGTATAATACAGGGACCTCCCGGATACTTTTACCAAAATAATTTCAATAAAATAAA
Found at i:37990 original size:2 final size:2
Alignment explanation
Indices: 37983--38011 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37973 TTTCTAATTA
37983 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
38012 ATACATATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:40272 original size:3 final size:3
Alignment explanation
Indices: 40254--40292 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
40244 GTTAACATTA
*
40254 TTC TTT TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
40293 TTCCAGTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:47492 original size:67 final size:66
Alignment explanation
Indices: 47379--47587 Score: 260
Period size: 67 Copynumber: 3.1 Consensus size: 66
47369 TCGATTAATG
* *
47379 TGTCGGGTTCCAAATGTGTTTTTTCCGATGGTCACTTTAGGTTCCAATTGATCTAGAGTCAATTA
1 TGTCGGATTCCAAATGCG-TTTTTCCGATGGTCACTTTAGGTTCCAATTGATC-AGAGTCAATTA
47444 AAA
64 AAA
* * * *
47447 TGTCGGATTCCAAATGCGTTTTTCCGATGGCCACTTTAGATTCCAATTGATCCGAAGTCGATTAA
1 TGTCGGATTCCAAATGCGTTTTTCCGATGGTCACTTTAGGTTCCAATTGATCAG-AGTCAATTAA
*
47512 TA
65 AA
* * * * *
47514 TTTCGGATTCCAAATGCGTTTTTTCGATGATCACTTTAGGTTCCAACTGATCCGGAGTCAATT--
1 TGTCGGATTCCAAATGCGTTTTTCCGATGGTCACTTTAGGTTCCAATTGAT-CAGAGTCAATTAA
47577 AA
65 AA
47579 TGTCGGATT
1 TGTCGGATT
47588 TCATTTTGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
65 9 0.07
66 1 0.01
67 94 0.77
68 18 0.15
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (66 bp):
TGTCGGATTCCAAATGCGTTTTTCCGATGGTCACTTTAGGTTCCAATTGATCAGAGTCAATTAAA
A
Found at i:50787 original size:21 final size:21
Alignment explanation
Indices: 50763--50805 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50753 CTAAAGGGTA
*
50763 TTACTAAATACCGCCCCCCTT
1 TTACTAAACACCGCCCCCCTT
**
50784 TTACTAGCCACCGCCCCCCTT
1 TTACTAAACACCGCCCCCCTT
50805 T
1 T
50806 GGACTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.47, G:0.07, T:0.28
Consensus pattern (21 bp):
TTACTAAACACCGCCCCCCTT
Found at i:51185 original size:27 final size:28
Alignment explanation
Indices: 51155--51215 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
51145 GCGCGCGGAT
*
51155 CGCGACCC-GCCATGGTCTAC-GGTCGCG
1 CGCGACCCGGCCATGGAC-ACGGGTCGCG
*
51182 CGCGACCCGGCCATGGACCCGGGTCGCG
1 CGCGACCCGGCCATGGACACGGGTCGCG
51210 CGCGAC
1 CGCGAC
51216 TGTAGACTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.11, C:0.43, G:0.36, T:0.10
Consensus pattern (28 bp):
CGCGACCCGGCCATGGACACGGGTCGCG
Found at i:53170 original size:2 final size:2
Alignment explanation
Indices: 53163--53193 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
53153 AGTCATGGTG
53163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
53194 ATCATAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:54560 original size:42 final size:41
Alignment explanation
Indices: 54450--54574 Score: 241
Period size: 41 Copynumber: 3.0 Consensus size: 41
54440 AAATCAAACA
54450 TGACTACCCATTGTCAAAGAACAAAAGGAAAAGAAAAAAGT
1 TGACTACCCATTGTCAAAGAACAAAAGGAAAAGAAAAAAGT
54491 TGACTACCCATTGTCAAAGAACAAAAGGAAAAGAAAAAAGT
1 TGACTACCCATTGTCAAAGAACAAAAGGAAAAGAAAAAAGT
54532 TGACTACCCATTGTCAAAGAACAAAAAGGAAAAGAAAAAAGT
1 TGACTACCCATTGTCAAAGAAC-AAAAGGAAAAGAAAAAAGT
54574 T
1 T
54575 AACAGATTTC
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
41 63 0.76
42 20 0.24
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.15
Consensus pattern (41 bp):
TGACTACCCATTGTCAAAGAACAAAAGGAAAAGAAAAAAGT
Found at i:58516 original size:68 final size:68
Alignment explanation
Indices: 58407--58593 Score: 365
Period size: 68 Copynumber: 2.8 Consensus size: 68
58397 CATCACTCAT
58407 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATAAGATCCCCTCATCT
1 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATAAGATCCCCTCATCT
58472 TCA
66 TCA
58475 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATAAGATCCCCTCATCT
1 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATAAGATCCCCTCATCT
58540 TCA
66 TCA
*
58543 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCACATGAATA
1 ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATA
58594 GTTTTAATTA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 118 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (68 bp):
ATTCGTGTTGATTAATTAGAAGTTTGATTATCGCAACCAATCGCATGAATAAGATCCCCTCATCT
TCA
Found at i:58678 original size:40 final size:40
Alignment explanation
Indices: 58632--58710 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
58622 AATATCATTA
58632 AAAAAAAAAAAGAGAAGTTTGATTATAATCACAAAAGGCT
1 AAAAAAAAAAAGAGAAGTTTGATTATAATCACAAAAGGCT
58672 AAAAAAAAAAAGAGAAGTTTGATTATAATCACAAAAGGC
1 AAAAAAAAAAAGAGAAGTTTGATTATAATCACAAAAGGC
58711 GCCTCACAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (40 bp):
AAAAAAAAAAAGAGAAGTTTGATTATAATCACAAAAGGCT
Found at i:59064 original size:41 final size:42
Alignment explanation
Indices: 59008--59091 Score: 152
Period size: 41 Copynumber: 2.0 Consensus size: 42
58998 GCATTTTGGT
*
59008 TGATGATGCTTATGAATCTTTCATATCAC-TCCTTAATCCAA
1 TGATGATGATTATGAATCTTTCATATCACTTCCTTAATCCAA
59049 TGATGATGATTATGAATCTTTCATATCACTTCCTTAATCCAA
1 TGATGATGATTATGAATCTTTCATATCACTTCCTTAATCCAA
59091 T
1 T
59092 TGGTTTCAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 28 0.68
42 13 0.32
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (42 bp):
TGATGATGATTATGAATCTTTCATATCACTTCCTTAATCCAA
Found at i:66479 original size:320 final size:319
Alignment explanation
Indices: 64056--68690 Score: 4712
Period size: 319 Copynumber: 14.4 Consensus size: 319
64046 TTTTCCTAAT
** * * * * * *
64056 ATTTTTTGCCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCA
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATTGAATGGTTTTTCA
* * * * *
64121 CGCTTCTAATATCGGTTTTCC-TATTTTTTCTGAATTAATTTCTAATTAAATCGAAACATGATTC
65 CGCTTCTAATATCGTTTTTCCAT-TTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGATTC
* * * *
64185 AAATGCTCATAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTT-AGATGGATATAGAT
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAGAT
* ** ** * **
64249 ATTTCAATG-AGACTTGGCGCCAAAAATCATGCAAAACACAGCCGGGACCCCGAATTGCGTTTTT
192 ATTTCAA-GAAGTCTT-TTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTT
* * * * *
64313 AGTCAAAAACTGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAACA
255 AGCCAAAAACCGTGATGATTCGTACACGATTTCGGC--------T--AAAAACTGACCCGAAA-A
*
64378 --TTTCTCGTCA
309 TTTTTTTC-TCA
*** * * * * * * * * * * *
64388 ATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTTAAAAAGATTAAAGGGCTTCTCA
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATTGAATGGTTTTTCA
* ** * * * * **
64453 TGCTTCTAATATTAATTTTTTTTTC-TATTTTTTCTGAATTAATTTCTAATTAAATCGAAACCGG
65 CGCTTCT-A-A-T-ATCGTTTTTCCAT-TTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAG
* ** * * *
64517 ATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAACTAAGATTTCGTT-AGATAAATAT
124 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATAT
* ** * *
64581 AGATATTTCAATG-AGTC--TTGACACAAAAATCATGCAAAACTGAGACGGGGCTACGGAACGTG
188 AGATATTTCAA-GAAGTCTTTTG-C-CAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCG
* *
64643 TTTTTAGCCAACAAA-CGTGAT-AGTTAGTACACGATTTCGGCTAAAATTTTGTAAAAATTGACC
250 TTTTTAGCCAA-AAACCGTGATGA-TTCGTACACGATTTCGGC----------TAAAAACTGACC
* *
64706 CGAAAGA--ATTTCCTCA
303 CGAAA-ATTTTTTTCTCA
* * * * * ** *
64722 ATTTTTGGCCACGATACTCATACAAAA-TATATAATTCAAC-ACCAAAAAGATTGAAAGACTATT
1 ATTTTTTGCCACAATACTCAGA-AAAATTATATAATTCAACGA--AAAAAAATTGAATGGTTTTT
* * * * ** * *
64785 --CG---C----GTC--TTTTCC-TATTTTTTCCGAATTAATTCCCAAATGAATGGAAACATGAT
63 CACGCTTCTAATATCGTTTTTCCAT-TTTTTTCCGAATTTATT-TCTAATTTATCGAAACAAGAT
* * *** * * * * *
64838 TCATATGCTTGTTTTAACAAATCGTTCAATCCAATGTGGGTAAGATTTGGTT-AGATGGATATAG
126 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAG
* * * ** * * *
64902 ATATTTCAATG-AGACTTGGTGCCAAAAATCGTGCAAAACAAAGGCAGGGCTCCGGAAA-GCGTT
190 ATATTTCAA-GAAGTCTT-TTGCCAAAAATCATGCAAAACTGAGCCGGGGC-CCCGAAACGCGTT
* *
64965 TTTAGTCAAAAACCGTGATGATTTGTACACGATTTCGGCTAAAAACTGACCC-AAAATGTTTTTT
252 TTTAGCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAAT-TTTTTT
65029 CTCA
316 CTCA
* * * *
65033 ATTTTTTGCCACAATATTCAGAAAAAATATATAAATCAACGCAAAAAAAATTGAAAGGTTTTTCA
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATTGAATGGTTTTTCA
* * *
65098 CGCTTCTAATATCGTTTTT-TAATTTTTTCCGAATTTATTTCTAATTTTATCGAAACATGATTCA
65 CGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAA-TTTATCGAAACAAGATTCA
* * * * *
65162 GATGCTTG-AAAAA-AAAACCTTAAATCCAATGTGGCTTAGATTTGGTTCATTGAATGTAGATAT
129 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATAT
* * * * *
65225 TTCAAGGAGACTTTCTGCCAAAATTCATGCAAATAC-GAGCTGGGG-CCCGAAACGCATTTTTAG
194 TTCAAGAAGTCTTT-TGCCAAAAATCATGCAAA-ACTGAGCCGGGGCCCCGAAACGCGTTTTTAG
* * *
65288 CAAAAAACCGTGATG---GGTACACGATTTCAGCTAAAAACTGACCCGAAAATTTTTTTCTCA
257 CCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* *
65348 ATTTTTTGCCACAATACTCAG-AAAATATATATAATTCAATGAAAAAAAATTGAAGGGTTTTTCA
1 ATTTTTTGCCACAATACTCAGAAAAAT-TATATAATTCAACGAAAAAAAATTGAATGGTTTTTCA
** * * *
65412 CTTTTCTAATATCGTTTTTACATTTTTTTTCCGAATATATATCTAATTTTATCGAAACAAGATTC
65 CGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAA-TTTATCGAAACAAGATTC
* * * *
65477 AGATGCTCATAAAAACAAAACCTTAAATCCAATGTGCCTGAGATTTGGTTCAATGAATGTAGATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
* * *
65542 TTTCAAGGAGTCTTTTTGCCAAAATTTATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAG
193 TTTCAAGAAGTC-TTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAG
* * *
65607 CCAAAAACCGTGATGGGGTTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTTCTCA
257 CCAAAAACCGTGAT--GATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * *
65672 ATTTTTTGCAACAATACTCATAAAAAATATATAATTCAACGCAAAAAATAAAATTGAATGGTTTT
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG---AAAA-AAAATTGAATGGTTTT
* * *
65737 TCACGCTTCTAATATGGTTTTTCCA-TTTTTTCCGAATTTATTTCTAATTATATCAAAACAAGAG
62 TCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGAT
* * *
65801 ACCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTCGGTT-AGATGAATATAG
126 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAG
* * * ** *
65865 ATATTTCAAGCAGTCTTTCTGTCAAAAATCATGCAAAACTGAGTCTAGGCCCCGAAACACGTTTT
190 ATATTTCAAGAAGTCTTT-TGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTT
* * * *
65930 TAGCCAAAAATCGTG-TGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTTCT
254 TAGCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCT
65994 CA
318 CA
* * * *
65996 ATTTTTTGCCATAATAATCAGAAAAA-TATATAATTCTACGCAAAAAAAATTAAATGGTTTTTCA
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATTGAATGGTTTTTCA
**
66060 CAATTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATTC
65 CGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTCT-AATTTATCGAAACAAGATTC
* *
66125 AGATGCTTGTAAGAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
* * * *
66190 TTTCCAGAAGTCTTATTGCTAAAAATCATGAAAAACTGAGCCGGGACCCC-AGAACGCGTTTTTA
193 TTTCAAGAAGTCTT-TTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGA-AACGCGTTTTTA
* * * * *
66254 GCCAAAAGCCGTGATGGTTCGTACATGATTTTGGCTAAAAACTGACCCGAAAA-ATTTTTCTCA
256 GCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* *
66317 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAACTAAATGGTTTTTCAC
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTGAATGGTTTTTCAC
* *
66381 GCTTCTAATATCGTTTTTCCATTTTTCTTCCGAATTTATTTCTAATTATTTCGAAACAAGATTCC
66 GCTTCTAATATCGTTTTTCCATTTTT-TTCCGAATTTATTTCTAATT-TATCGAAACAAGATTCA
*
66446 GATGCTCGTAAAAACAAATCCTTAAACCCAATGTGGCTGAGATTTGGTT-AGATGAATATAGATA
129 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAGATA
* ** * *
66510 TTTCAA-ACAG-CATTTCTGCGAAAAATCATGCAAAACTGAGCCTAGACCCCGAAACACGTTTTT
193 TTTCAAGA-AGTC-TTT-TGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTT
* * * * *
66573 AGCCAAAAACTGTG-TGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCA
255 AGCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * * * * *
66637 ATTTTTTTTCCAAAATACTCAGAAAATTTTTATAATTCAATGCAAAAAAATTGAAGGGTTTTTCA
1 A-TTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTGAATGGTTTTTCA
** * * *
66702 CTTTTCTAATAACG-TTTTCCATTTTTTTTCCCGAATATATATCTAATTTTATCGAAACAAGATT
65 CGCTTCTAATATCGTTTTTCCA-TTTTTTT-CCGAATTTATTTCTAA-TTTATCGAAACAAGATT
* * * *
66766 TAGATGCTCGTAAAACCAAAACATTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGAT
127 CAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGAT
* * * * * * * *
66831 ATTTCCAGAAGTCTTATGGCTAAAACTCATGAAAAACTGAGCCGAGGCCCCGGAACGCGTTATTA
192 ATTTCAAGAAGTCTT-TTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTA
* *
66896 GCCAAAAGCCGTGATGATTCGTACACGATTTTGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
256 GCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* *
66960 ATTTTTTCCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAACTGAATGGTTTTTCAC
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTGAATGGTTTTTCAC
*
67024 GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCCG
66 GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGATTCAG
* *
67089 ATGCTCGTAAAAACAAATCCTTAAATCAAATGTGCCTGAGATTTGGTT-AGATGAATATAGATAT
130 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAGATAT
* * ** * *
67153 TTCAAGCAGTCTTTCTGCCTAAAATCATGCAAAACTGAGCCTAGGCCTCGAAACACGTTTTTAGC
194 TTCAAGAAGTCTTT-TGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGC
* * * * *
67218 CAAAAATCGTG-TGATGCATACACAATTTCGGCTAAAAACTGA-CCGAAAA--ATTTTCTCA
258 CAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * *
67276 ATTTTTTGCCATAATACTCAGAAAAA-TATATAATTCTACGCAAAAAAAAATTGAAGGGTTTTTC
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG--AAAAAAAATTGAATGGTTTTTC
*** *
67340 ATAATTCTAATATCGTTTTTCCATTTTTTTCGGAATTTATTTCTAAATTTATCGAAACAAGATTC
64 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT-AATTTATCGAAACAAGATTC
* * *
67405 AGATGCTTGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTCAATGAATTTAGATA
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
* * * * **
67470 TTTAAAGGAGGTATTCTGCCAAAAATCATGCAAAACTGAGCCGGTTCCCCGAAAAC-CGTTTTTA
193 TTTCAA-GAAGTCTTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCG-AAACGCGTTTTTA
* * *
67534 GCAAAAAAACCGTGATGA---GTACATGATTTCGGCTAAAAACTGACCCAAAAACTTTTTTTCTC
256 GC-CAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCTC
67596 A
319 A
* *
67597 ATTTTTTGCCACAATACTCAGAAAAAATATATAAATCAACG-AAAAAAATTGAAAT-GTTTTTCA
1 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTG-AATGGTTTTTCA
*
67660 CGTTTCTAATATCGTTTTTTCCA-TTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTC
65 CGCTTCTAATATCG-TTTTTCCATTTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGATTC
* *
67724 CGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGGTT-AGATGAATATAGAT
128 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAGAT
* * * ** * * *
67788 ATTTCAAGCAGTCTTTTTGTCAAAAATCATGCAAAATTGAGTTGGGACTCCGAAACACGTTTTTA
192 ATTTCAAGAAGTC-TTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTA
* * * *
67853 ACCAAAAACCGTG-TGATGCATACACAATTTCGGCTAAAAACTGA-CCGAAAATTTTTTTCTCA
256 GCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * *
67915 ATTTTTTTGGCACAATACTCAGAAAATATTTTATAATTCAATGCAAAAAAAAAATTGAA-GGATT
1 A-TTTTTTGCCACAATACTCAGAAAA-ATTATATAATTCAA--C-GAAAAAAAATTGAATGGTTT
** * * * *
67979 TTCACTTTTCTAACAACGTTTTTCCATTTTTTTCCGAATATATATCTAATTTTATCGAAACAAGA
61 TTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAA-TTTATCGAAACAAGA
* * * *
68044 TTCAGATGCTCGTAAAAATAAAACCTT-AATCCAATGTGTCTGAGATTTGGTTCAATGAATGTAG
125 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAG
* * * * * **
68108 ATATTTCAAGGAGTCTTTTTGCCAAAATTTATGCAAAACTAAGCTGGGGCCCCGAAACAAGTTTT
190 ATATTTCAAGAAGTC-TTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTT
* * * * * *
68173 TAGACAAAAACAGTGATGGTTAGTACACGATTTCGGCTAAAGACTGACTCGAAAA-TTTTTTCTC
254 TAGCCAAAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTC
68237 A
319 A
* * *
68238 A-TTTTTGCCACAATACTCAGAAGAAA-TATATAAATCAACGGGAAAAAAATTGAAGGGTTTTTC
1 ATTTTTTGCCACAATACTCAGAA-AAATTATATAATTCAAC-GAAAAAAAATTGAATGGTTTTTC
*
68301 ACGCTTCTAATATAGTTTTTCCCA-TTTTTTCCGAATTTATTT-TAATTATATCGAAACAAGATT
64 ACGCTTCTAATATCGTTTTT-CCATTTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGATT
* * * * * **
68364 TAGATGCTCATAAAACCAAATCGTTAAATCCAATGTGTCTGAGATTTGGTTGGATGAATATAGAT
127 CAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGAT
* * * * * *
68429 ATTACAAGGAGTCTTTCAGCCAAAAATCATGCAAAACTAAGTCGGGGCACCGAAACGCGTTTTTA
192 ATTTCAAGAAGTCTTT-TGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTA
** * * * * * *
68494 -ATATAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAGCTG-GCCAAAAATTTTTTTCTCA
256 GCCA-AAAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * *
68557 CTTTTTTGCCAAAATATTCAGAAAAATATATATAATTCAACGAAAAAAAAACTGAATGGTTTTTC
1 ATTTTTTGCCACAATACTCAGAAAAAT-TATATAATTCAACG-AAAAAAAATTGAATGGTTTTTC
*
68622 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTC
64 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATT-TATCGAAACAAGATTC
68687 AGAT
128 AGAT
68691 ATCGTTTTTC
Statistics
Matches: 3660, Mismatches: 497, Indels: 302
0.82 0.11 0.07
Matches are distributed among these distances:
308 1 0.00
309 3 0.00
310 16 0.00
311 53 0.01
313 3 0.00
314 43 0.01
315 83 0.02
316 83 0.02
317 40 0.01
318 388 0.11
319 676 0.18
320 540 0.15
321 288 0.08
322 542 0.15
323 249 0.07
324 125 0.03
325 11 0.00
326 154 0.04
327 4 0.00
328 36 0.01
329 1 0.00
332 60 0.02
333 2 0.00
334 51 0.01
335 86 0.02
336 117 0.03
337 5 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (319 bp):
ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTGAATGGTTTTTCAC
GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTTATCGAAACAAGATTCAGA
TGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTT
CAAGAAGTCTTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAA
AAACCGTGATGATTCGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
Found at i:66661 original size:642 final size:640
Alignment explanation
Indices: 64056--69709 Score: 5311
Period size: 642 Copynumber: 8.7 Consensus size: 640
64046 TTTTCCTAAT
* * * * * * *
64056 ATTTTTTGCCATGATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCA
1 ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTCA
** * * * * *
64121 CGCTTCTAATATCGGTTTTCC-TATTTTTTCTGAATTAATTTCT-AATTAAATCGAAACATGATT
66 CTTTTCTAATATCGTTTTTCCAT-TTTTTTCCGAATTTATTTCTAAATT-TATCGAAACAAGATT
* * * *
64184 CAAATGCTCATAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTT-AGATGGATATAGA
129 CAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAGA
* *** ** * *
64248 TATTTCAATG-AGACTTGGCGCCAAAAATCATGCAAAACACAGCCGGGACCCCGAATTGCGTTTT
193 TATTTCAA-GAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAA-CGCGTTTT
* * * * *
64312 TAGTCAAAAACTGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACACGAAAC
256 TAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC--------T--AAAAACTGACCCGAAA-
* *** * * * * * * *
64377 A--TTTCTCGTCAATTTCCGGCCACCATATTCATAAAAAATATATAACTCAACGTTAAAAAGATT
310 ATTTTTTTC-TCAATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATT
* * * * ** * * *
64440 AAAGGGCTTCTCATGCTTCTAATATTAATTTTTTTTTC-TATTTTTTCTGAATTAATTTCTAATT
373 AAATGGTTTTTCACGCTTCT-A-A-T-ATCGTTTTTCCAT-TTTTTTCCGAATTTATTTCTAATT
* ** ** ** * *
64504 AAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAACTAAGATTTCG
433 ATATCGAAACAAGATTCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGG
* *
64569 TTAGATAAATATAGATATTTCAATG-AGTC--T-TGACACAAAAATCATGCAAAACTGAGACGGG
498 TTAGATGAATATAGATATTTCAA-GCAGTCTTTCTG-C-CAAAAATCATGCAAAACTGAG-CTGG
** * ** * *
64630 GCTACGGAACGTGTTTTTAGCCAACAAAC---GTGATAGTTAGTACACGATTTCGGCTAAAATTT
559 GCCCCGAAACACGTTTTTAGCCAA-AAACTGTGTGAT-G-CA-TACACAATTTCGGC--------
* * *
64692 TGTAAAAATTGACCCGAAAGA--ATTTCCTCA
612 --TAAAAACTGACCCGAAA-ATTTTTTTCTCA
* ** * * * * *
64722 ATTTTTGGCCACGATACTCATACAAA-ATATATAATTCAACACCAAAAAGATTGAA-AG------
1 ATTTTTTGCCATAATACTCAGA-AAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTC
* * * * * ** * *
64779 ACTATTC-----GCGTCTTTTCC-TATTTTTTCCGAATTAATTCCCAAATGAATGGAAACATGAT
65 ACTTTTCTAATATCGT-TTTTCCAT-TTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGAT
* * *** * * * * *
64838 TCATATGCTTGTTTTAACAAATCGTTCAATCCAATGTGGGTAAGATTTGGTT-AGATGGATATAG
128 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCA-ATGAATATAG
* ** * ** * * * *
64902 ATATTTCAATG-AGACTTGGTGCCAAAAATCGTGCAAAACAAAGGCAGGGCTCCGGAAAGCGTTT
192 ATATTTCAA-GAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGC-CCCGAACGCGTTT
* * *
64966 TTAGTCAAAAACCGTGATGATTTGTACACGATTTCGGCTAAAAACTGACCC-AAAATGTTTTTTC
255 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAT-TTTTTTC
* * *
65030 TCAATTTTTTGCCACAATATTCAGAAAAAATATATAAATCAACGCAAAAAAAATTGAAA-GGTTT
319 TCAATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATT-AAATGGTTT
* * * *
65094 TTCACGCTTCTAATATCGTTTTT-TAATTTTTTCCGAATTTATTTCTAATTTTATCGAAACATGA
382 TTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGA
* * * * * *
65158 TTCAGATGCTTG-AAAAA-AAAACCTTAAATCCAATGTGGCTTAGATTTGGTTCA-TTGAATGTA
447 TTCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-AGATGAATATA
* * * * * *
65220 GATATTTCAAGGAGACTTTCTGCCAAAATTCATGCAAATAC-GAGCTGGGGCCCGAAACGCATTT
511 GATATTTCAAGCAGTCTTTCTGCCAAAAATCATGCAAA-ACTGAGCTGGGCCCCGAAACACGTTT
* * ** * *
65284 TTAGCAAAAAAC--CGTGATGGGTACACGATTTCAGCTAAAAACTGACCCGAAAATTTTTTTCTC
575 TTAGCCAAAAACTGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTC
65347 A
640 A
* *
65348 ATTTTTTGCCACAATACTCAGAAAATATATATAATTCAATG-AAAAAAAATTGAAGGGTTTTTCA
1 ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTCA
* * * *
65412 CTTTTCTAATATCGTTTTTACATTTTTTTTCCGAATATATATCTAATTTTATCGAAACAAGATTC
66 CTTTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATTC
* * * *
65477 AGATGCTCATAAAAACAAAACCTTAAATCCAATGTGCCTGAGATTTGGTTCAATGAATGTAGATA
130 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
* * * *
65542 TTTCAAGGAGTCTTTTTGCCAAAATTTATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAG
195 TTTCAAGAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCG-AACGCGTTTTTAG
*
65607 CCAAAAACCGTGATGGGGTTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTTCTCA
259 CCAAAAACCGTGAT--GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * *
65672 ATTTTTTGCAACAATACTCATAAAAAATATATAATTCAACGCAAAAAATAAAATTGAATGGTTTT
322 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG---AAAA-AAAATTAAATGGTTTT
* * *
65737 TCACGCTTCTAATATGGTTTTTCCA-TTTTTTCCGAATTTATTTCTAATTATATCAAAACAAGAG
383 TCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGAT
* *
65801 ACCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTCGGTTAGATGAATATAGA
448 TCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGA
* *
65866 TATTTCAAGCAGTCTTTCTGTCAAAAATCATGCAAAACTGAGTCTAGGCCCCGAAACACGTTTTT
513 TATTTCAAGCAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-CTGGGCCCCGAAACACGTTTTT
65931 AGCCAAAAA-TCGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTTCTC
577 AGCCAAAAACT-GTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCTC
65995 A
640 A
* * * *
65996 ATTTTTTGCCATAATAATCAGAAAA-ATATATAATTCTACGCAAAAAAAATTAAATGGTTTTTCA
1 ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTCA
**
66060 CAATTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATTC
66 CTTTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATTC
* *
66125 AGATGCTTGTAAGAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
130 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATA
* * * *
66190 TTTCCAGAAGTCTTATTGCTAAAAATCATGAAAAACTGAGCCGGGACCCCAGAACGCGTTTTTAG
195 TTTCAAGAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC-GAACGCGTTTTTAG
* * * * *
66255 CCAAAAGCCGTGATGGTTCGTACATGATTTTGGCTAAAAACTGACCCGAAAA-ATTTTTCTCAAT
259 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAAT
*
66319 TTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAACTAAATGGTTTTTCACGC
324 TTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTAAATGGTTTTTCACGC
*
66383 TTCTAATATCGTTTTTCCATTTTTCTTCCGAATTTATTTCTAATTATTTCGAAACAAGATTCCGA
389 TTCTAATATCGTTTTTCCATTTTT-TTCCGAATTTATTTCTAATTATATCGAAACAAGATTCCGA
*
66448 TGCTCGTAAAAACAAATCCTTAAACCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTT
453 TGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTT
* * * *
66513 CAAACAG-CATTTCTGCGAAAAATCATGCAAAACTGAGCCTAGACCCCGAAACACGTTTTTAGCC
518 CAAGCAGTC-TTTCTGCCAAAAATCATGCAAAACTGAG-CTGGGCCCCGAAACACGTTTTTAGCC
*
66577 AAAAACTGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCA
581 AAAAACTGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * * *
66637 ATTTTTTTTCCAAAATACTCAGAAAATTTTTATAATTCAATGC-AAAAAAATTGAAGGGTTTTTC
1 A-TTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTC
* * * *
66701 ACTTTTCTAATAACG-TTTTCCATTTTTTTTCCCGAATATATATCTAATTTTATCGAAACAAGAT
65 ACTTTTCTAATATCGTTTTTCCA-TTTTTTT-CCGAATTTATTTCTAAATTTATCGAAACAAGAT
* * * *
66765 TTAGATGCTCGTAAAACCAAAACATTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGA
128 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGA
* * * * * * *
66830 TATTTCCAGAAGTCTTATGGCTAAAACTCATGAAAAACTGAGCCGAGGCCCCGGAACGCGTTATT
193 TATTTCAAGAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC-GAACGCGTTTTT
* * * *
66895 AGCCAAAAGCCGTGATGATTCGTACACGATTTTGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
257 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * *
66960 ATTTTTTCCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAACTGAATGGTTTTTCAC
322 ATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTAAATGGTTTTTCAC
67024 GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCCG
387 GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCCG
* *
67089 ATGCTCGTAAAAACAAATCCTTAAATCAAATGTGCCTGAGATTTGGTTAGATGAATATAGATATT
452 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
* * *
67154 TCAAGCAGTCTTTCTGCCTAAAATCATGCAAAACTGAGCCTAGGCCTCGAAACACGTTTTTAGCC
517 TCAAGCAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-CTGGGCCCCGAAACACGTTTTTAGCC
*
67219 AAAAA-TCGTGTGATGCATACACAATTTCGGCTAAAAACTGA-CCGAAAA--ATTTTCTCA
581 AAAAACT-GTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
*
67276 ATTTTTTGCCATAATACTCAGAAAA-ATATATAATTCTACGCAAAAAAAAATTGAAGGGTTTTTC
1 ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGC-AAAAAAAATTGAAGGGTTTTTC
* *
67340 A-TAATTCTAATATCGTTTTTCCATTTTTTTCGGAATTTATTTCTAAATTTATCGAAACAAGATT
65 ACT-TTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATT
* * *
67404 CAGATGCTTGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTCAATGAATTTAGAT
129 CAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGAT
* * * * **
67469 ATTTAAAGGAGGTATT-CTGCCAAAAATCATGCAAAACTGAGCCGGTTCCCCGAAAAC-CGTTTT
194 ATTTCAA-GAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCG--AACGCGTTTT
* * *
67532 TAGCAAAAAAACCGTGAT-G--AGTACATGATTTCGGCTAAAAACTGACCCAAAAACTTTTTTTC
256 TAGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTC
* *
67594 TCAATTTTTTGCCACAATACTCAGAAAAAATATATAAATCAACG-AAAAAAATTGAAAT-GTTTT
319 TCAATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATT-AAATGGTTTT
*
67657 TCACGTTTCTAATATCGTTTTTTCCA-TTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGA
383 TCACGCTTCTAATATCG-TTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGA
*
67721 TTCCGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
447 TTCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
* * * * *
67786 ATATTTCAAGCAGTCTTTTTGTCAAAAATCATGCAAAATTGAGTTGGGACTCCGAAACACGTTTT
512 ATATTTCAAGCAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGG-CCCCGAAACACGTTTT
* *
67851 TAACCAAAAACCGTGTGATGCATACACAATTTCGGCTAAAAACTGA-CCGAAAATTTTTTTCTCA
576 TAGCCAAAAACTGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* * * * *
67915 ATTTTTTTGGCACAATACTCAGAAAATATTTTATAATTCAATGCAAAAAAAAAATTGAA-GGATT
1 A-TTTTTTGCCATAATACTCAGAAAATA-TATATAATTCAACGC--AAAAAAAATTGAAGGGTTT
* * * * *
67979 TTCACTTTTCTAACAACGTTTTTCCATTTTTTTCCGAATATATATCTAATTTTATCGAAACAAGA
62 TTCACTTTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGA
* * * *
68044 TTCAGATGCTCGTAAAAATAAAACCTT-AATCCAATGTGTCTGAGATTTGGTTCAATGAATGTAG
127 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAG
* * * * * * **
68108 ATATTTCAAGGAGTCTTTTTGCCAAAATTTATGCAAAACTAAGCTGGGGCCCCGAAACAAGTTTT
192 ATATTTCAAGAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCG-AACGCGTTTT
* * * *
68173 TAGACAAAAACAGTGATGGTTAGTACACGATTTCGGCTAAAGACTGACTCGAAAA-TTTTTTCTC
256 TAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTC
* * * *
68237 AA-TTTTTGCCACAATACTCAGAAGAAA-TATATAAATCAACGGGAAAAAAATTGAAGGGTTTTT
321 AATTTTTTGCCACAATACTCAGAA-AAATTATATAATTCAAC-GAAAAAAAATTAAATGGTTTTT
*
68300 CACGCTTCTAATATAGTTTTTCCCA-TTTTTTCCGAATTTATTT-TAATTATATCGAAACAAGAT
384 CACGCTTCTAATATCGTTTTT-CCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGAT
** * * * * *
68363 TTAGATGCTCATAAAACCAAATCGTTAAATCCAATGTGTCTGAGATTTGGTTGGATGAATATAGA
448 TCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGA
* * * * * * *
68428 TATTACAAGGAGTCTTTCAGCCAAAAATCATGCAAAACTAAGTCGGGGCACCGAAACGCGTTTTT
513 TATTTCAAGCAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-CTGGGCCCCGAAACACGTTTTT
** * * * ** * * *
68493 A-ATATAAAACCGTGATGGT-TAGTACATGATTTCGGCTAAAAGCTG-GCCAAAAATTTTTTTCT
577 AGCCA-AAAACTGTG-TGATGCA-TACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCT
68555 CA
639 CA
* * * * * *
68557 CTTTTTTGCCAAAATATTCAGAAAAATATATATAATTCAACGAAAAAAAAACTGAATGGTTTTTC
1 ATTTTTTGCCATAATACTCAG-AAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTC
** *
68622 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATGTATTTCT-AATTATATCGAAACAAGATT
65 ACTTTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATT-TATCGAAACAAGATT
* ***** ** ** * * * * * *
68686 CAGAT-ATCGTTTTTCCATTTTTCCGAATTTATTTCTTATTATATCGAAAC-AAGATTCCGATGC
129 CAGATGCTCGTAAAAACA--AATCC----TTAAATC-CA--ATGT-G--GCTGAGATT-TG--GT
* * * * * ** * * * ** * **
68749 TC-GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAAGGAAT-ATAG-ATATTTC
179 TCAATGAATATAGATATTTCAA--GAA-GT--CT--TA-TT-GCCAA-AAATCAT-GCA-A--AA
* *** ** **** * * **
68811 CAGAAGTCCTTTTGCCAAAAATCATAAAAAACTGAGCCGGGGCTCG-C-GAAACGCGTTTTTAGC
230 CTG-AG-CC-GGGGCC------C----CGAAC---G-CGTTTTTAGCCAAAAAC-CG-TGAT-G-
*** *
68874 CAAAAGCCGTGATGGTTCGTACACGATTTTGGCTAAAAACTGACCCGAAAATTTTTTTTCTCAAT
274 --GTT------A------GTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCTCAAT
* * * * *
68939 TTTTTGCCACAATATTCAGAAAAATTATATAATTCAACGAAAAAAAAATTGAAGGGGTTTTCACA
324 TTTTTGCCACAATACTCAGAAAAATTATATAATTCAACG-AAAAAAAATTAAATGGTTTTTCACG
* **
69004 ATTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATT-TATCGAAACAAGATTTAG
388 CTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT-AATTATATCGAAACAAGATTCCG
* *
69068 ATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTCA-ATGAATGTAGATAT
452 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-AGATGAATATAGATAT
* * * * * *
69132 TTAAAGGAGGCTTTCTGCCAAAATTCATGCAAAACTGAGCTGGGTCCCCGAAGCCCGTTTTTAG-
516 TTCAAGCAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGG-CCCCGAAACACGTTTTTAGC
* * * * * * **
69196 CAAAAA-AGCGTGATGGTTAGTACACGATTTCGGTTAAAAACTGACCCAAAAAAATTTTTCTCA
580 CAAAAACTGTGTGAT-G-CA-TACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
* *
69259 ATTTTTTGCCATAATACTCAGAAGAA-ATATATAAATCAACGGAAAAAAAAATTGAAGGGTTTTT
1 ATTTTTTGCCATAATACTCAGAA-AATATATATAATTCAAC-GCAAAAAAAATTGAAGGGTTTTT
** * *
69323 CACGCTTCTAATATAGTTTTTCCATTTTTTTCCGAATTTATTT-TTAATTATATCGAAACAAGAT
64 CACTTTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATT-TATCGAAACAAGAT
* * * * * **
69387 TTAGATCCTCATAAAACCAAATCGTTAAATCCAATGTGGCTGAGATTTGGTTGGATGAATATAGA
128 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGA
* * * * **
69452 TATTACAAGGAGTCTT-TCTGCCAAAAATCATGCAAAACTAAGTCGGGGCATCGAAACGCGTTTT
193 TATTTCAAGAAGTCTTAT-TGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCG-AACGCGTTTT
** * * * * *
69516 TA-ATATAAAACCGTGATGGTTAGTACATGACTTCGGCTAAAAGCTGA-TCAAAAATTTTTTTCT
256 TAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCT
* * * * *
69579 CACTTTTTTGCCAAAATATTCAGAAAAATATATATAATTCAACGAAAAAAAACTAAATGATTTTT
320 CAATTTTTTGCCACAATACTCAGAAAAAT-TATATAATTCAACGAAAAAAAATTAAATGGTTTTT
*
69644 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATT
384 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATT
69709 C
449 C
69710 AGATATCGTT
Statistics
Matches: 4207, Mismatches: 583, Indels: 418
0.81 0.11 0.08
Matches are distributed among these distances:
624 1 0.00
625 30 0.01
626 40 0.01
632 6 0.00
635 13 0.00
636 42 0.01
637 443 0.11
638 238 0.06
639 197 0.05
640 238 0.06
641 330 0.08
642 924 0.22
643 171 0.04
644 188 0.04
645 163 0.04
646 65 0.02
647 51 0.01
648 241 0.06
649 4 0.00
650 1 0.00
651 5 0.00
652 3 0.00
653 10 0.00
654 5 0.00
655 179 0.04
656 10 0.00
658 2 0.00
659 5 0.00
661 3 0.00
662 11 0.00
663 7 0.00
664 4 0.00
665 2 0.00
666 53 0.01
667 4 0.00
668 3 0.00
674 1 0.00
675 2 0.00
676 1 0.00
677 5 0.00
678 1 0.00
679 4 0.00
680 7 0.00
681 12 0.00
682 2 0.00
685 2 0.00
687 2 0.00
688 1 0.00
689 2 0.00
690 10 0.00
691 3 0.00
692 5 0.00
693 1 0.00
694 3 0.00
696 1 0.00
697 35 0.01
698 3 0.00
699 20 0.00
700 95 0.02
701 165 0.04
702 126 0.03
703 6 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (640 bp):
ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCAAAAAAAATTGAAGGGTTTTTCA
CTTTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATTTATCGAAACAAGATTCA
GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATAT
TTCAAGAAGTCTTATTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAACGCGTTTTTAGCC
AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTT
TTTGCCACAATACTCAGAAAAATTATATAATTCAACGAAAAAAAATTAAATGGTTTTTCACGCTT
CTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCCGATGC
TCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAA
GCAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGCCCCGAAACACGTTTTTAGCCAAAAA
CTGTGTGATGCATACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA
Found at i:68727 original size:56 final size:57
Alignment explanation
Indices: 68631--68742 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 57
68621 CACGCTTCTA
68631 ATATCGTTTTTCCATTTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
1 ATATCGTTTTTCCA-TTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
* *
68689 ATATCGTTTTTCCA-TTTTTCCGAATTTATTTCTTATTATATCGAAACAAGATTC
1 ATATCGTTTTTCCATTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTC
68743 CGATGCTCGT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
56 38 0.73
58 14 0.27
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (57 bp):
ATATCGTTTTTCCATTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
Found at i:69306 original size:323 final size:320
Alignment explanation
Indices: 68689--69713 Score: 1339
Period size: 323 Copynumber: 3.2 Consensus size: 320
68679 CAAGATTCAG
* *
68689 ATATCGTTTTTCCA--TTTTTCCGAATTTATTTCTTATTATATCGAAACAAGATTCCGATGCTCG
1 ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCAGATGCTCG
* ** *
68752 TAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAAGGAATATAGATATTTCCAGAAG
66 TAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAATGAATATAGATATTTAAAGGAG
** * * *
68817 TCCTTT-TGCCAAAAATCATAAAAAACTGAGCCGGGGCTCGCGAAACGCGTTTTTAGC-CAAAAG
131 -CCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGGC-CCCGAAACGCGTTTTTAGCAAAAAAG
* * *
68880 CCGTGATGGTTCGTACACGATTTTGGCTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTG
194 -CGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC-AAAAATTTTTTTCTCAATTTTTTG
* * * **
68945 CCACAATATTCAGAAAAATTATATAATTCAACGAAAAAAAAATTGAAGGGGTTTTCACAATTCTA
257 CCAAAATATTCAGAAAAA-TATATAAATCAACGAAAAAAAAATTGAAGGGTTTTTCACGCTTCTA
*
69010 ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAAATT-TATCGAAACAAGATTTAGATGCTC
1 ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCT-AATTATATCGAAACAAGATTCAGATGCTC
* *
69074 GTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTCAATGAATGTAGATATTTAAAGG
65 GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-AATGAATATAGATATTTAAAGG
* * * * *
69139 AGGCTTTCTGCCAAAATTCATGCAAAACTGAGCTGGGTCCCCGAAGCCCGTTTTTAGCAAAAAAG
129 AGCCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCGAAACGCGTTTTTAGCAAAAAAG
* **
69204 CGTGATGGTTAGTACACGATTTCGGTTAAAAACTGACCCAAAAAAATTTTTCTCAATTTTTTGCC
194 CGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCTCAATTTTTTGCC
* *
69269 ATAATACTCAGAAGAAATATATAAATCAACGGAAAAAAAAATTGAAGGGTTTTTCACGCTTCTA
259 AAAATATTCAGAA-AAATATATAAATCAAC-GAAAAAAAAATTGAAGGGTTTTTCACGCTTCTA
* * * * *
69333 ATATAGTTTTTCCATTTTTTTCCGAATTTATTTTTAATTATATCGAAACAAGATTTAGATCCTCA
1 ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCAGATGCTCG
* * *
69398 TAAAACCAAATCGTTAAATCCAATGTGGCTGAGATTTGGTTGGATGAATATAGATA-TTACAAGG
66 TAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-AATGAATATAGATATTTA-AAGG
* * ** ** *
69462 AGTCTTTCTGCCAAAAATCATGCAAAACTAAG-TCGGGGCATCGAAACGCGTTTTTAATATAAAA
129 AGCCTTTCTGCCAAAAATCATGCAAAACTGAGCT-GGGGCCCCGAAACGCGTTTTTAGCAAAAAA
* * * * * *
69526 CCGTGATGGTTAGTACATGACTTCGGCTAAAAGCTGA-TCAAAAATTTTTTTCTCACTTTTTTGC
193 GCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCTCAATTTTTTGC
* * * *
69590 CAAAATATTCAGAAAAATATATATAATTCAACG-AAAAAAAACTAAATGATTTTTCACGCTTCTA
258 CAAAATATTCAGAAAAATATATA-AA-TCAACGAAAAAAAAATTGAAGGGTTTTTCACGCTTCTA
*
69654 ATATCGTTTTTCCATTTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAGAT
1 ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCAGAT
69714 ATCGTTTTTC
Statistics
Matches: 620, Mismatches: 71, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
321 106 0.17
322 92 0.15
323 369 0.60
324 53 0.09
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (320 bp):
ATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTATATCGAAACAAGATTCAGATGCTCG
TAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAATGAATATAGATATTTAAAGGAG
CCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCGAAACGCGTTTTTAGCAAAAAAGCG
TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCAAAAATTTTTTTCTCAATTTTTTGCCAA
AATATTCAGAAAAATATATAAATCAACGAAAAAAAAATTGAAGGGTTTTTCACGCTTCTA
Found at i:69749 original size:55 final size:56
Alignment explanation
Indices: 69654--69764 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 56
69644 CACGCTTCTA
69654 ATATCGTTTTTCCATTTTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
1 ATATCGTTTTTCCA--TTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
* *
69712 ATATCGTTTTTCCA-TTTTCCGAATTTATTTCTTATTATATCGAAACAAGATTC
1 ATATCGTTTTTCCATTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTC
69765 CGATGCTCGT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
55 37 0.73
58 14 0.27
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (56 bp):
ATATCGTTTTTCCATTTTTCCGAATGTATTTCTAATTATATCGAAACAAGATTCAG
Found at i:70476 original size:322 final size:322
Alignment explanation
Indices: 69712--70546 Score: 978
Period size: 324 Copynumber: 2.6 Consensus size: 322
69702 CAAGATTCAG
* * *
69712 ATATCGTTTTTCCA----TTTTCCGAATTTATTTCTTATTATATCGAAACAAGATTCCGATGCTC
1 ATATCGTTTTTCCATTTTTTTTCCGAATATATTACTAATTATATCGAAACAAGATTCCGATGCTC
* *
69773 GTAAAAACAAATA-CTTAAATCCAATGTGGCTGAGATTTGGTTAAGGAATATAGATATTTCCAGA
66 GTAAAAACAAA-ACCTTAAATCCAATGT-GCTGAGATTTGGTTAATGAATATAGATATTTCAAGA
* * * * *
69837 AGTCTTTTTGCCAAAAATCATG-AAAATCTGAGCCGGGGCTCCGGAACGCGTCTTTAGCCAAAAG
129 AGTCTTTCTGCC-AAAATCATGCAAAA-CTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAA
* * * * * * * * * * *
69901 CCGTGATGGTTCGTACACGATTTTGGTTAAAAACTTACCCGAAAAATTTTTTTCTCATTTTTTGC
192 CCATGATGATGCATAAACCATTTCGGCTAAAAACTGACCCCAAAAATTTTTTTCTCATTTCTTGC
*
69966 CACAATACTCAGAAAAATTATATAATTCAACGGAAAAAAAGAATTGAAGGGTTTTACACACTTCC
257 CACAATACTCAGAAAAATTATATAATTCAACAGAAAAAAAGAATTGAAGGGTTTTACACACTTCC
70031 A
322 A
* * *
70032 ATATCTTTTTTCCATTTTTTTTCCGAATTTATTACTAATTATATCCAAACAAGATTCCGATGCTC
1 ATATCGTTTTTCCATTTTTTTTCCGAATATATTACTAATTATATCGAAACAAGATTCCGATGCTC
* * * * *
70097 GTAAAAACAAATCCTTAAATCTAATGTTGTTGAGATTTAGTTAGATGAATATAGATATTTCAAGC
66 GTAAAAACAAAACCTTAAATCCAATG-TGCTGAGATTTGGTTA-ATGAATATAGATATTTCAAGA
*
70162 AGTCTTTCTGCCAACAATCATGCAAAACTGAGCCGGGGCCCCGAAACACGTTTTTAGCCAAAAAC
129 AGTCTTTCTGCCAA-AATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAAC
70227 CATG-TGATGCATAAACCATTTCGGCTAAAAACTGACCCCAAAAA-TTTTTTCTCAATTTCTTGC
193 CATGATGATGCATAAACCATTTCGGCTAAAAACTGACCCCAAAAATTTTTTTCTC-ATTTCTTGC
** * * * **
70290 CATTATACTCA-AAAAATATATATAATTTAA-AG-CAAAAA-AATTGAAGGGTTTTGCACTTTTC
257 CACAATACTCAGAAAAAT-TATATAATTCAACAGAAAAAAAGAATTGAAGGGTTTTACACACTTC
*
70351 TA
321 CA
* * * * **
70353 TTATCGTTTTTCCATTTTTTTTTTCGGATATA-TATCTAATTTTATCGAAACAAGATTTAGATGC
1 ATATCGTTTTTCCA-TTTTTTTTCCGAATATATTA-CTAATTATATCGAAACAAGATTCCGATGC
* * *
70417 TCGTAAAGACAAAACCTTAAATCCAATGTGCCTGAGATTTGGTTCAATAAATGTAGATATTTCAA
64 TCGTAAAAACAAAACCTTAAATCCAATGTG-CTGAGATTTGGTT-AATGAATATAGATATTTCAA
* * * *
70482 GGAGTCTTTCTGCCAAAATTCATGCAAAACT-AACCCGGGCCCCGAAACGCATTTTTAGCCAAAA
127 GAAGTCTTTCTGCCAAAA-TCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAA
70546 A
191 A
70547 TATGGCCCTT
Statistics
Matches: 441, Mismatches: 58, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
320 13 0.03
321 69 0.16
322 124 0.28
323 17 0.04
324 141 0.32
325 73 0.17
326 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (322 bp):
ATATCGTTTTTCCATTTTTTTTCCGAATATATTACTAATTATATCGAAACAAGATTCCGATGCTC
GTAAAAACAAAACCTTAAATCCAATGTGCTGAGATTTGGTTAATGAATATAGATATTTCAAGAAG
TCTTTCTGCCAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCAT
GATGATGCATAAACCATTTCGGCTAAAAACTGACCCCAAAAATTTTTTTCTCATTTCTTGCCACA
ATACTCAGAAAAATTATATAATTCAACAGAAAAAAAGAATTGAAGGGTTTTACACACTTCCA
Found at i:70613 original size:25 final size:25
Alignment explanation
Indices: 70546--72101 Score: 1737
Period size: 25 Copynumber: 58.2 Consensus size: 25
70536 TTAGCCAAAA
70546 ATATGGCCCTTACTGAATATGCAACTATAT
1 ATATGGCCC-TACTGAATATGCAAC----T
70576 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
*
70603 ATATGGCCCTACTAAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
70628 ATATGATTATGACCCTACTGAATATGCAACTATAT
1 ATATG-----G-CCCTACTGAATATGCAAC----T
70663 GATTATGGCCCTACTGAATATGCAACTATAT
1 -A-TATGGCCCTACTGAATATGCAAC----T
70694 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
* *
70721 ATATGGTCCTACTGAATGTGCAACTATAT
1 ATATGGCCCTACTGAATATGCAAC----T
70750 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
70777 ATATGGCCCCTACTGAATATGCAACT
1 ATATGG-CCCTACTGAATATGCAACT
70803 ATATGATTATGACCCTACTGAATATGCAACT
1 ATATG-----G-CCCTACTGAATATGCAACT
*
70834 ATATGACCCCTACTGAATATGCAACT
1 ATATG-GCCCTACTGAATATGCAACT
*
70860 ATATGACCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
70885 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
70910 ATATGGTCCCTACTGAATATGCAACT
1 ATATGG-CCCTACTGAATATGCAACT
* *
70936 ATATCGATTCCCTACTGAAAATGCAACT
1 ATAT-G--GCCCTACTGAATATGCAACT
*
70964 ATATGGCCCTACTGAATGTGCAACT
1 ATATGGCCCTACTGAATATGCAACT
* *
70989 ATATGATTCCCTACTGAA-ATTGAAACT
1 ATATG--GCCCTACTGAATA-TGCAACT
*
71016 ATATGACCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71041 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71066 ATATGGCCCTTACTGAATATGCAACT
1 ATATGGCCC-TACTGAATATGCAACT
* *
71092 ACATGGCCCTACTGAATATGCTACT
1 ATATGGCCCTACTGAATATGCAACT
*
71117 ATATGATTCCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
* * *
71144 ATATGATTCCCTATTGAAAATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
*
71171 ATATGGCCCCTACTGAATGTGCAACT
1 ATATGG-CCCTACTGAATATGCAACT
* *
71197 ATATGATTCCCTACTGAATATGGAACT
1 ATATG--GCCCTACTGAATATGCAACT
* *
71224 ATATGACCCTACTCAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71249 ATATGGCCCTATTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71274 ACATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71299 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71324 ATATGATTCCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
* *
71351 ATATGATTCCCTACTGAAAATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
71378 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71403 ATATGATTCCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
*
71430 ATATGACCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71455 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
**
71480 ATATGATTTCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
**
71507 ATATGATTTCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
*
71534 AAATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71559 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71584 ACATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
**
71609 ATATGATTTCCTACTGAATATGCAACT
1 ATATG--GCCCTACTGAATATGCAACT
* *
71636 ATATGACCCTACTGAACATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71661 ATATCGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
**
71686 ATATGAGTTACTACTGAATATGCAACT
1 ATATG-G-CCCTACTGAATATGCAACT
71713 ATTATGGCCCTACTGAATATGCAACTATAT
1 A-TATGGCCCTACTGAATATGCAAC----T
71743 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
*
71770 ATATGGTCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
*
71795 ATATGACCCTACTGAATATGCAACTATAT
1 ATATGGCCCTACTGAATATGCAAC----T
71824 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
71851 ATATGATTATGACCCTACTGAATATGCAACT
1 ATATG-----G-CCCTACTGAATATGCAACT
71882 ATATGGCCCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
* *
71907 ATATGACTCTACTGAATATGCAACT
1 ATATGGCCCTACTGAATATGCAACT
71932 ATATGGCCCCTACTGAATATGCAACT
1 ATATGG-CCCTACTGAATATGCAACT
*
71958 ATATGGTCCTACTGAATATGCAACTATAT
1 ATATGGCCCTACTGAATATGCAAC----T
71987 GATTATGGCCCTACTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
*
72014 ATATGGCCCCTATTGAATATGCAACTATAT
1 ATATGG-CCCTACTGAATATGCAAC----T
*
72044 GATTATGGCCCTAGTGAATATGCAACT
1 -A-TATGGCCCTACTGAATATGCAACT
72071 ATATGGCCCCTACTGAATATGCAACT
1 ATATGG-CCCTACTGAATATGCAACT
*
72097 TTATG
1 ATATG
72102 ATGCGCCTAA
Statistics
Matches: 1356, Mismatches: 87, Indels: 169
0.84 0.05 0.10
Matches are distributed among these distances:
25 591 0.44
26 205 0.15
27 265 0.20
28 26 0.02
29 3 0.00
30 7 0.01
31 239 0.18
32 14 0.01
35 1 0.00
36 1 0.00
37 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (25 bp):
ATATGGCCCTACTGAATATGCAACT
Found at i:70813 original size:16 final size:16
Alignment explanation
Indices: 70790--70839 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
70780 TGGCCCCTAC
70790 TGAATATGCAACTATA
1 TGAATATGCAACTATA
* * *
70806 TGATTATG-ACCCTA-C
1 TGAATATGCA-ACTATA
70821 TGAATATGCAACTATA
1 TGAATATGCAACTATA
70837 TGA
1 TGA
70840 CCCCTACTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (16 bp):
TGAATATGCAACTATA
Found at i:71048 original size:156 final size:152
Alignment explanation
Indices: 70546--72103 Score: 1802
Period size: 156 Copynumber: 9.7 Consensus size: 152
70536 TTAGCCAAAA
70546 ATATGGCCCTTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGGCC
1 ATATGGCCC-TACTGAATATGCAAC----T-A-TATGGCCCTACTGAATATGCAACTATATGGCC
*
70611 CTACTAAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGATTATGGCCCTA
59 CTACTGAATATGCAACTATATG-----G-CCCTACTGAATATGCAACTATATGA-T-T--CCCTA
70676 CTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACT
114 CTGAATATGCAACTATATG---A---CCCTACTGAATATGCAACT
* *
70721 ATATGGTCCTACTGAATGTGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGGCCC
1 ATATGGCCCTACTGAATATGCAAC----T-A-TATGGCCCTACTGAATATGCAACTATATGG-CC
*
70786 CTACTGAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGA-CCCCTACTGA
59 CTACTGAATATGCAACTATATG-----G-CCCTACTGAATATGCAACTATATGATTCCCTACTGA
70850 ATATGCAACTATATGACCCTACTGAATATGCAACT
118 ATATGCAACTATATGACCCTACTGAATATGCAACT
*
70885 ATATGGCCCTACTGAATATGCAACTATATGGTCCCTACTGAATATGCAACTATATCGATTCCCTA
1 ATATGGCCCTACTGAATATGCAACTATATGG-CCCTACTGAATATGCAACTATAT-G--GCCCTA
* * *
70950 CTGAAAATGCAACTATATGGCCCTACTGAATGTGCAACTATATGATTCCCTACTGAA-ATTGAAA
62 CTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATA-TGCAA
71014 CTATATGACCCTACTGAATATGCAACT
126 CTATATGACCCTACTGAATATGCAACT
*
71041 ATATGGCCCTACTGAATATGCAACTATATGGCCCTTACTGAATATGCAACTACATGGCCCTACTG
1 ATATGGCCCTACTGAATATGCAACTATATGGCCC-TACTGAATATGCAACTATATGGCCCTACTG
* * * *
71106 AATATGCTACTATATGATTCCCTACTGAATATGCAACTATATGATTCCCTATTGAAAATGCAACT
65 AATATGCAACTATATG--GCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACT
* *
71171 ATATGGCCCCTACTGAATGTGCAACT
128 ATAT-GACCCTACTGAATATGCAACT
* * * * *
71197 ATATGATTCCCTACTGAATATGGAACTATATGACCCTACTCAATATGCAACTATATGGCCCTATT
1 ATATG--GCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGGCCCTACT
* *
71262 GAATATGCAACTACATGGCCCTACTGAATATGCAACTATATG--GCCCTACTGAATATGCAACTA
64 GAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTA
71325 TATGATTCCCTACTGAATATGCAACT
129 TATGA--CCCTACTGAATATGCAACT
* * *
71351 ATATGATTCCCTACTGAAAATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTA
1 ATATG--GCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATG--GCCCTA
* *
71416 CTGAATATGCAACTATATGACCCTACTGAATATGCAACTATATG--GCCCTACTGAATATGCAAC
62 CTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAAC
*
71479 TATATGATTTCCTACTGAATATGCAACT
127 TATATGA--CCCTACTGAATATGCAACT
** *
71507 ATATGATTTCCTACTGAATATGCAACTAAATGGCCCTACTGAATATGCAACTATATGGCCCTACT
1 ATATG--GCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGGCCCTACT
* *
71572 GAATATGCAACTACATGGCCCTACTGAATATGCAACTATATGATTTCCTACTGAATATGCAACTA
64 GAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTA
*
71637 TATGACCCTACTGAACATGCAACT
129 TATGACCCTACTGAATATGCAACT
* **
71661 ATATCGCCCTACTGAATATGCAACTATATGAGTTACTACTGAATATGCAACTATTATGGCCCTAC
1 ATATGGCCCTACTGAATATGCAACTATATG-G-CCCTACTGAATATGCAACTA-TATGGCCCTAC
*
71726 TGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATG-GT-CCTACTGAATAT
63 TGAATATGCAAC----T-A-TATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATAT
71789 GCAACTATATGACCCTACTGAATATGCAACTATAT
122 GCAACTATATGACCCTACTGAATATGCAAC----T
71824 GATTATGGCCCTACTGAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGGC
1 -A-TATGGCCCTACTGAATATGCAACTATATG-----G-CCCTACTGAATATGCAACTATATGGC
* * **
71889 CCTACTGAATATGCAACTATATGACTCTACTGAATATGCAACTATATG-GCCCCTACTGAATATG
58 CCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATG
**
71953 CAACTATATGGTCCTACTGAATATGCAACTATAT
123 CAACTATATGACCCTACTGAATATGCAAC----T
*
71987 GATTATGGCCCTACTGAATATGCAACTATATGGCCCCTATTGAATATGCAACTATATGATTATGG
1 -A-TATGGCCCTACTGAATATGCAACTATATGG-CCCTACTGAATATGCAAC----T-A-TATGG
* *
72052 CCCTAGTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTTTATGAT
57 CCCTACTGAATATGCAACTATATGG-CCCTACTGAATATGCAACTATATGAT
72104 GCGCCTAATT
Statistics
Matches: 1255, Mismatches: 80, Indels: 105
0.87 0.06 0.07
Matches are distributed among these distances:
152 23 0.02
153 44 0.04
154 157 0.13
155 121 0.10
156 287 0.23
157 41 0.03
158 49 0.04
159 66 0.05
160 4 0.00
161 51 0.04
162 29 0.02
163 80 0.06
164 71 0.06
165 50 0.04
167 1 0.00
168 23 0.02
169 19 0.02
170 24 0.02
174 52 0.04
175 63 0.05
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (152 bp):
ATATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGGCCCTACTGA
ATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATA
TGACCCTACTGAATATGCAACT
Found at i:71571 original size:206 final size:202
Alignment explanation
Indices: 70546--72102 Score: 1640
Period size: 206 Copynumber: 7.3 Consensus size: 202
70536 TTAGCCAAAA
*
70546 ATATGGCCCTTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGGCC
1 ATATGGCCC-TACTGAATATGCAACTATATG---AT--CCCTACTGAATATGCAACTATATGACC
*
70611 CTACTAAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGATTATGGCCCTA
60 CTACTGAATATGCAACTATATG-----G-CCCTACTGAATATGCAACTATATGA-T-T---CCTA
* *
70676 CTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGGTCCTACTGAATGTG
114 CTGAATATGCAAC----T-A-TATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATG
70741 CAACTATATGATTATGGCCCTACTGAATATGCAACT
173 CAAC----T-A-TATGGCCCTACTGAATATGCAACT
70777 ATATGGCCCCTACTGAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGACC
1 ATATGG-CCCTACTGAATATGCAACTATATG---AT--CCCTACTGAATATGCAACTATATGA-C
* **
70842 CCTACTGAATATGCAACTATATGACCCTACTGAATATGCAACTATATG-GCCCTACTGAATATGC
59 CCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCTACTGAATATGC
* *
70906 AACTATATGGTCCCTACTGAATATGCAACTATATCGATTCCCTACTGAAAATGCAACTATATGGC
124 AACTATATGG-CCCTACTGAATATGCAACTATAT-G--GCCCTACTGAATATGCAACTATATGGC
*
70971 CCTACTGAATGTGCAACT
185 CCTACTGAATATGCAACT
* * *
70989 ATATGATTCCCTACTGAA-ATTGAAACTATATGA-CCCTACTGAATATGCAACTATATGGCCCTA
1 ATATG--GCCCTACTGAATA-TGCAACTATATGATCCCTACTGAATATGCAACTATATGACCCTA
* ** *
71052 CTGAATATGCAACTATATGGCCCTTACTGAATATGCAACTACATG-GCCCTACTGAATATGCTAC
63 CTGAATATGCAACTATATGGCCC-TACTGAATATGCAACTATATGATTCCTACTGAATATGCAAC
* * * *
71116 TATATGATTCCCTACTGAATATGCAACTATATGATTCCCTATTGAAAATGCAACTATATGGCCCC
127 TATATG--GCCCTACTGAATATGCAACTATATG--GCCCTACTGAATATGCAACTATATGG-CCC
*
71181 TACTGAATGTGCAACT
187 TACTGAATATGCAACT
* * * * *
71197 ATATGATTCCCTACTGAATATGGAACTATATGA-CCCTACTCAATATGCAACTATATGGCCCTAT
1 ATATG--GCCCTACTGAATATGCAACTATATGATCCCTACTGAATATGCAACTATATGACCCTAC
* **
71261 TGAATATGCAACTACATGGCCCTACTGAATATGCAACTATATG-GCCCTACTGAATATGCAACTA
64 TGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCTACTGAATATGCAACTA
* * *
71325 TATGATTCCCTACTGAATATGCAACTATATGATTCCCTACTGAAAATGCAACTATATGGCCCTAC
129 TATG--GCCCTACTGAATATGCAACTATATG--GCCCTACTGAATATGCAACTATATGGCCCTAC
71390 TGAATATGCAACT
190 TGAATATGCAACT
* *
71403 ATATGATTCCCTACTGAATATGCAACTATATGA-CCCTACTGAATATGCAACTATATGGCCCTAC
1 ATATG--GCCCTACTGAATATGCAACTATATGATCCCTACTGAATATGCAACTATATGACCCTAC
**
71467 TGAATATGCAACTATATGATTTCCTACTGAATATGCAACTATATGATTTCCTACTGAATATGCAA
64 TGAATATGCAACTATATG--GCCCTACTGAATATGCAACTATATGA-TTCCTACTGAATATGCAA
* *
71532 CTAAATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTACATGGCCCTACT
126 CTATATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGGCCCTACT
71597 GAATATGCAACT
191 GAATATGCAACT
** *
71609 ATATGATTTCCTACTGAATATGCAACTATATGA-CCCTACTGAACATGCAACTATATCG-CCCTA
1 ATATG--GCCCTACTGAATATGCAACTATATGATCCCTACTGAATATGCAACTATAT-GACCCTA
** **
71672 CTGAATATGCAACTATATGAGTTACTACTGAATATGCAACTATTATG-GCCCTACTGAATATGCA
63 CTGAATATGCAACTATATG-G-CCCTACTGAATATGCAACTA-TATGATTCCTACTGAATATGCA
* *
71736 ACTATATGATTATGGCCCTACTGAATATGCAACTATATGGTCCTACTGAATATGCAACTATATGA
125 AC----T-A-TATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGG
71801 CCCTACTGAATATGCAACTATAT
184 CCCTACTGAATATGCAAC----T
*
71824 GATTATGGCCCTACTGAATATGCAACTATATGATTATGACCCTACTGAATATGCAACTATATGGC
1 -A-TATGGCCCTACTGAATATGCAACTATATG---AT--CCCTACTGAATATGCAACTATATGAC
* * ***
71889 CCTACTGAATATGCAACTATATGACTCTACTGAATATGCAACTATATGGCCCCTACTGAATATGC
59 CCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCTACTGAATATGC
*
71954 AACTATATGGTCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATG
124 AACTATATGGCCCTACTGAATATGCAAC----T-A-TATGGCCCTACTGAATATGCAACTATATG
*
72019 GCCCCTATTGAATATGCAACTATAT
183 G-CCCTACTGAATATGCAAC----T
* ** *
72044 GATTATGGCCCTAGTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTTTATGA
1 -A-TATGGCCCTACTGAATATGCAACTATATGATCCCTACTGAATATGCAACTATATGA
72103 TGCGCCTAAT
Statistics
Matches: 1211, Mismatches: 67, Indels: 112
0.87 0.05 0.08
Matches are distributed among these distances:
205 17 0.01
206 262 0.22
207 199 0.16
208 169 0.14
209 2 0.00
210 24 0.02
211 69 0.06
212 29 0.02
213 44 0.04
214 7 0.01
215 72 0.06
216 3 0.00
217 5 0.00
218 21 0.02
219 64 0.05
220 71 0.06
221 46 0.04
226 24 0.02
231 57 0.05
232 26 0.02
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (202 bp):
ATATGGCCCTACTGAATATGCAACTATATGATCCCTACTGAATATGCAACTATATGACCCTACTG
AATATGCAACTATATGGCCCTACTGAATATGCAACTATATGATTCCTACTGAATATGCAACTATA
TGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATATGCAACTATATGGCCCTACTGAATA
TGCAACT
Found at i:72036 original size:57 final size:57
Alignment explanation
Indices: 71883--72103 Score: 330
Period size: 57 Copynumber: 4.0 Consensus size: 57
71873 TATGCAACTA
* *
71883 TATGGCCCTACTGAATATGCAACTATAT-GACTCTACTGAATATGCAACTATATG--
1 TATGGCCCTACTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTATATGAT
* *
71937 ---GCCCCTACTGAATATGCAACTATATGG-TCCTACTGAATATGCAACTATATGAT
1 TATGGCCCTACTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTATATGAT
*
71990 TATGGCCCTACTGAATATGCAACTATATGGCCCCTATTGAATATGCAACTATATGAT
1 TATGGCCCTACTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTATATGAT
* *
72047 TATGGCCCTAGTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTTTATGAT
1 TATGGCCCTACTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTATATGAT
72104 GCGCCTAATT
Statistics
Matches: 151, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
51 46 0.30
52 1 0.01
56 26 0.17
57 78 0.52
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (57 bp):
TATGGCCCTACTGAATATGCAACTATATGGCCCCTACTGAATATGCAACTATATGAT
Found at i:83071 original size:22 final size:23
Alignment explanation
Indices: 83031--83073 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
83021 TCAATAACAA
83031 AGAAAAAACAAGTTGCATAAACC
1 AGAAAAAACAAGTTGCATAAACC
* *
83054 AGAAAAGACATGTT-CATAAA
1 AGAAAAAACAAGTTGCATAAA
83074 TACGTCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.56, C:0.14, G:0.14, T:0.16
Consensus pattern (23 bp):
AGAAAAAACAAGTTGCATAAACC
Found at i:85916 original size:2 final size:2
Alignment explanation
Indices: 85909--85946 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
85899 TATGTCTGTG
85909 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85947 ACATATTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95195 original size:2 final size:2
Alignment explanation
Indices: 95188--95212 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95178 AATTGTGAAC
95188 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
95213 GCTCCTCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95461 original size:2 final size:2
Alignment explanation
Indices: 95454--95497 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
95444 CCTATGTCTG
95454 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95496 TA
1 TA
95498 ACATATTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101220 original size:85 final size:87
Alignment explanation
Indices: 101050--101220 Score: 249
Period size: 85 Copynumber: 2.0 Consensus size: 87
101040 GATTAGAAAA
*
101050 AAACAAAAATCTTATGGTTAATTAAACTTACCATATGTTTGATTTTTTTAAAGGGTATTGCAATA
1 AAACAAAAATCTTATGGTTAATTAAACTTACCATATGTTTGATTTTTTTAAAGGGTATTGCAACA
101115 AATTGATCCTGAAATCATGCTT
66 AATTGATCCTGAAATCATGCTT
* ** *
101137 AAAC-AAAATCTT-TAGGTTAATTTATTTTACCATATGTTTGA-TTTTTTAAAGGGTATTGTAAC
1 AAACAAAAATCTTAT-GGTTAATTAAACTTACCATATGTTTGATTTTTTTAAAGGGTATTGCAAC
* *
101199 GAATTGATCCTGAAATTATGCT
65 AAATTGATCCTGAAATCATGCT
101221 AAATAAATGT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 40 0.53
86 32 0.42
87 4 0.05
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (87 bp):
AAACAAAAATCTTATGGTTAATTAAACTTACCATATGTTTGATTTTTTTAAAGGGTATTGCAACA
AATTGATCCTGAAATCATGCTT
Found at i:106062 original size:53 final size:54
Alignment explanation
Indices: 105962--106068 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 54
105952 TAATAAATTC
* * *
105962 AGAAAATGGACATGTTTCAACTCCACTACTCGCTCGTGGAGTCCAAAATTTACGG
1 AGAAAATGGACATG-TTCAACTCCACTACCCGCTCGTAGAATCCAAAATTTACGG
* *
106017 AGAAAATGGACATG-TCAACTCCACTACCCGCTTGTAGAATTCAAAATTTACG
1 AGAAAATGGACATGTTCAACTCCACTACCCGCTCGTAGAATCCAAAATTTACG
106069 ATGAGTCCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 33 0.70
55 14 0.30
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (54 bp):
AGAAAATGGACATGTTCAACTCCACTACCCGCTCGTAGAATCCAAAATTTACGG
Found at i:106240 original size:45 final size:45
Alignment explanation
Indices: 106176--106262 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
106166 CCCTCCAGAG
106176 ACTAATCTAATCTTGGATTTTCGAGACTTGGCTCGAGCTAAATAT
1 ACTAATCTAATCTTGGATTTTCGAGACTTGGCTCGAGCTAAATAT
106221 ACTAATCTAATCTTGGATTTTCGAGACTTGGCTCGAGCTAAA
1 ACTAATCTAATCTTGGATTTTCGAGACTTGGCTCGAGCTAAA
106263 CTTGTGCGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (45 bp):
ACTAATCTAATCTTGGATTTTCGAGACTTGGCTCGAGCTAAATAT
Found at i:112030 original size:140 final size:140
Alignment explanation
Indices: 111849--112128 Score: 560
Period size: 140 Copynumber: 2.0 Consensus size: 140
111839 TAGAAGCAAA
111849 ATTTGATTTCTTTATTTGTTAATGGTTAATACGAATTTATACTATACAAATAGGCATGTTATTCT
1 ATTTGATTTCTTTATTTGTTAATGGTTAATACGAATTTATACTATACAAATAGGCATGTTATTCT
111914 TTTGTTCATACTTGATGGACATGAATATGTAAATGGACATGAATATATATGTAACAATGGAAAAG
66 TTTGTTCATACTTGATGGACATGAATATGTAAATGGACATGAATATATATGTAACAATGGAAAAG
111979 CTTCATGGAT
131 CTTCATGGAT
111989 ATTTGATTTCTTTATTTGTTAATGGTTAATACGAATTTATACTATACAAATAGGCATGTTATTCT
1 ATTTGATTTCTTTATTTGTTAATGGTTAATACGAATTTATACTATACAAATAGGCATGTTATTCT
112054 TTTGTTCATACTTGATGGACATGAATATGTAAATGGACATGAATATATATGTAACAATGGAAAAG
66 TTTGTTCATACTTGATGGACATGAATATGTAAATGGACATGAATATATATGTAACAATGGAAAAG
112119 CTTCATGGAT
131 CTTCATGGAT
112129 CCCATTTTTA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 140 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (140 bp):
ATTTGATTTCTTTATTTGTTAATGGTTAATACGAATTTATACTATACAAATAGGCATGTTATTCT
TTTGTTCATACTTGATGGACATGAATATGTAAATGGACATGAATATATATGTAACAATGGAAAAG
CTTCATGGAT
Found at i:112540 original size:31 final size:31
Alignment explanation
Indices: 112444--112621 Score: 187
Period size: 31 Copynumber: 5.8 Consensus size: 31
112434 TGGCACGTCT
* * * * *
112444 CTTTTT-GTGCACGAGGCATGCCACGTGTCA
1 CTTTTTGGTACACGTGGCGTGCCACATGTCG
* * * * * * *
112474 TTTTTTGATACACATGACGTGACACGTGTCA
1 CTTTTTGGTACACGTGGCGTGCCACATGTCG
* *
112505 CTTTTTGGTACATGTGGCGTGCCACATATCG
1 CTTTTTGGTACACGTGGCGTGCCACATGTCG
*
112536 CTTTTTGGTACACGTGGCGTACCACATGTCG
1 CTTTTTGGTACACGTGGCGTGCCACATGTCG
112567 CTTTTTGGTACACGTGGCGTGCCACATGTCG
1 CTTTTTGGTACACGTGGCGTGCCACATGTCG
* * *
112598 TTTTTTGGTACATGTGGCATGCCA
1 CTTTTTGGTACACGTGGCGTGCCA
112622 TGTCGGACAC
Statistics
Matches: 123, Mismatches: 24, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
30 5 0.04
31 118 0.96
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.34
Consensus pattern (31 bp):
CTTTTTGGTACACGTGGCGTGCCACATGTCG
Found at i:117415 original size:182 final size:180
Alignment explanation
Indices: 117107--117437 Score: 520
Period size: 182 Copynumber: 1.8 Consensus size: 180
117097 GATATTCTTC
* *
117107 TCCATCAACAAAGCTGCTACAGGGTATTTCTAGCAGAACAAAATAGAATTTGAAAGGCCTGACCC
1 TCCATCAACAAAGCTGCTACAGGGTATTTCTAGCAGAACAAAAAAGAATTTGAAAGGCCTCACCC
* *
117172 TCCATATGTTTTCTTCATGGCTATCCTATATATGAGATCTCTTAGCCTCTTACTCTCTCCTTGAT
66 TCCATATGTTTTCTTCATGGCTATCCTATATATGAGACCTCTTAGCCTCTCACTCTCTCCTTGAT
*
117237 GTTCTACTATGCCATGACTAACACTATTTTGAACCAAAGATATCTTCCTTT
131 GTTC-AATATGCCATGACTAACACTATTTTGAACCAAAGATATCTTCCTTT
* * *
117288 TCCATCAACAAGGCTGCTACAGGGTATTTCTAGCAGGACCAAAAAAGAATTTGAATGGCCTCACC
1 TCCATCAACAAAGCTGCTACAGGGTATTTCTAGCA-GAACAAAAAAGAATTTGAAAGGCCTCACC
** * *
117353 CTCCATATGTTTTCTTTGTGGCTATCTTATATATGAGACCTCTTAGTCC-CTCACTGTCTCCTTG
65 CTCCATATGTTTTCTTCATGGCTATCCTATATATGAGACCTCTTAG-CCTCTCACTCTCTCCTTG
117417 ATGTTCAATATGCCATGACTA
129 ATGTTCAATATGCCATGACTA
117438 CGGCATAATT
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
181 48 0.35
182 86 0.63
183 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (180 bp):
TCCATCAACAAAGCTGCTACAGGGTATTTCTAGCAGAACAAAAAAGAATTTGAAAGGCCTCACCC
TCCATATGTTTTCTTCATGGCTATCCTATATATGAGACCTCTTAGCCTCTCACTCTCTCCTTGAT
GTTCAATATGCCATGACTAACACTATTTTGAACCAAAGATATCTTCCTTT
Found at i:120619 original size:17 final size:16
Alignment explanation
Indices: 120565--120615 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
120555 GATCATCCCT
*
120565 AGATCACTAGTGATCTA
1 AGATCACCAGTGATC-A
120582 AGATCACCAGTGATGCA
1 AGATCACCAGTGAT-CA
*
120599 AGATCACCGGTGATCA
1 AGATCACCAGTGATCA
120615 A
1 A
120616 AGATTACATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 3 0.10
17 27 0.87
18 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (16 bp):
AGATCACCAGTGATCA
Found at i:136510 original size:18 final size:19
Alignment explanation
Indices: 136471--136510 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
136461 ATGCTCCCGT
136471 TGTGATGCTCCCACTTTTCAA
1 TGTGATGCTCCCA--TTTCAA
136492 TGTGATGCTCCCA-TTCAA
1 TGTGATGCTCCCATTTCAA
136510 T
1 T
136511 TCTGACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
21 13 0.68
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.38
Consensus pattern (19 bp):
TGTGATGCTCCCATTTCAA
Found at i:142166 original size:14 final size:14
Alignment explanation
Indices: 142147--142188 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
142137 GTATTTCATC
142147 TCTCAAATCTCACT
1 TCTCAAATCTCACT
142161 TCTCAAATCTCACT
1 TCTCAAATCTCACT
142175 TCTCAAATCTCACT
1 TCTCAAATCTCACT
142189 GTGAATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (14 bp):
TCTCAAATCTCACT
Found at i:147972 original size:16 final size:16
Alignment explanation
Indices: 147953--147984 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
147943 AACTTATTCT
*
147953 TCAATGAAATTATTAC
1 TCAAGGAAATTATTAC
147969 TCAAGGAAATTATTAC
1 TCAAGGAAATTATTAC
147985 ATATAGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.34
Consensus pattern (16 bp):
TCAAGGAAATTATTAC
Done.