Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020726.1 Corchorus olitorius cultivar O-4 contig20759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72885

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
287--1031
332
2.3
314
82
8
867
33
14
18
33
1.92
1095--2208
320
3.4
318
87
5
1429
33
15
17
33
1.91
1418--6688
886
6.0
883
80
8
6085
33
14
16
36
1.88
4620--5764
323
3.5
321
86
3
1501
33
15
16
34
1.90
7530--8768
318
3.9
321
85
3
1504
31
15
18
35
1.92
7550--8761
639
1.9
640
84
4
1624
31
15
18
35
1.92
11125--11234
54
2.1
53
86
5
150
34
26
21
17
1.95
13727--13784
29
2.1
28
90
6
91
46
5
15
32
1.68
15625--15684
31
1.9
31
89
0
93
38
20
20
21
1.94
18970--19063
45
2.2
43
88
7
138
38
19
6
36
1.77
21051--21098
21
2.3
21
92
0
78
31
22
8
37
1.84
21289--21327
18
2.4
15
87
12
51
25
5
0
69
1.09
21335--21418
39
2.1
39
82
12
100
59
3
1
35
1.22
23894--23949
21
2.7
21
80
0
76
32
14
10
42
1.80
26626--26669
15
2.9
15
89
3
61
0
40
0
59
0.98
29595--29660
31
2.1
31
86
5
89
37
19
3
39
1.67
30237--30466
122
1.8
126
86
7
335
38
16
13
30
1.88
36409--36472
31
2.1
31
100
0
128
10
21
12
54
1.68
39316--39348
17
1.9
17
93
0
57
39
3
0
57
1.14
39390--39452
32
2.0
32
100
0
126
44
6
9
39
1.62
66364--66514
79
1.9
79
95
0
275
45
17
9
27
1.79
68346--68370
13
1.9
13
100
0
50
32
0
20
48
1.50

Tables:   1

The End!