Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020727.1 Corchorus olitorius cultivar O-4 contig20760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101655

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
449--505
25
2.4
25
88
5
82
31
5
3
59
1.36
14613--14659
21
2.3
21
85
3
69
17
4
4
74
1.14
14918--14995
29
2.7
29
91
0
138
20
11
30
37
1.88
22536--22570
17
2.1
17
100
0
70
34
5
11
48
1.63
25951--25988
14
2.8
13
92
8
58
0
2
10
86
0.66
25951--25988
19
2.0
20
89
5
60
0
2
10
86
0.66
26873--26942
36
1.9
36
91
5
115
21
11
7
60
1.55
27993--28076
42
2.0
40
93
4
141
36
3
8
51
1.50
33993--34035
11
3.9
11
81
0
50
39
20
11
27
1.88
34052--34093
21
2.0
21
86
9
59
45
26
4
23
1.73
37119--37172
26
2.0
28
89
10
85
51
24
9
14
1.71
38513--38553
20
2.0
20
95
0
73
43
19
14
21
1.87
41414--41453
21
1.9
21
84
0
53
40
0
57
2
1.12
41585--41630
18
2.6
17
82
6
56
50
2
0
47
1.13
41671--41751
39
2.0
40
92
2
137
50
8
3
37
1.51
41859--42268
202
2.0
203
94
2
718
35
11
8
44
1.70
42785--42854
36
1.9
36
91
0
113
60
8
10
21
1.55
44108--44218
57
1.9
57
87
3
161
32
19
13
34
1.91
50973--51117
76
2.0
70
84
11
186
30
19
20
30
1.97
53928--54003
31
2.5
31
82
8
84
30
19
5
44
1.73
78060--80543
334
7.5
329
77
6
2030
36
14
13
34
1.86
78062--80543
669
3.7
649
76
10
2053
36
14
13
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85361--85418
20
2.9
22
87
10
65
22
13
1
62
1.41
85369--85426
5
12.4
5
78
14
70
22
17
0
60
1.36
86082--87533
331
4.4
330
79
8
1360
33
12
15
38
1.86
87620--87660
20
2.0
20
90
0
64
39
0
2
58
1.11
99078--99126
19
2.7
18
81
6
62
26
6
6
61
1.43
99594--100483
329
2.7
329
82
7
948
34
14
14
37
1.86

Tables:   1

The End!