Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020728.1 Corchorus olitorius cultivar O-4 contig20761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50201

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--1571
333
4.5
328
78
8
1312
33
13
15
38
1.86
1--1571
332
4.7
329
78
7
1398
32
13
15
38
1.87
1--1538
666
2.3
656
79
7
1631
32
13
16
37
1.87
1565--1589
2
12.5
2
100
0
50
48
0
0
52
1.00
10165--13815
335
11.1
330
76
10
2732
36
15
14
33
1.87
10486--12416
661
2.9
656
77
9
1545
37
16
14
32
1.88
19139--19207
27
2.6
26
90
4
120
24
18
11
44
1.83
27266--27294
11
2.6
11
100
0
58
0
17
0
82
0.66
31028--31057
11
2.7
11
100
0
60
83
10
0
6
0.81
37448--37571
66
1.9
66
87
0
185
38
11
8
41
1.72
42587--42613
14
1.9
14
100
0
54
88
0
11
0
0.50
46058--46263
102
2.0
102
100
0
412
32
23
7
36
1.83
46589--46618
10
2.9
10
95
5
51
90
10
0
0
0.47
46588--46618
16
2.0
15
93
6
53
90
9
0
0
0.46
47185--47220
2
18.0
2
100
0
72
50
0
0
50
1.00
48030--48075
23
2.0
24
91
4
76
15
15
28
41
1.87
48437--48468
15
2.1
15
100
0
64
37
0
9
53
1.34

Tables:   1

The End!