Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020729.1 Corchorus olitorius cultivar O-4 contig20762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154898

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7010--7049
14
3.0
14
89
7
57
22
7
17
52
1.69
7790--7828
14
2.9
13
88
7
53
23
7
15
53
1.67
6374--8181
780
2.3
764
94
2
3168
29
15
18
36
1.91
9111--9149
14
2.9
13
88
7
53
23
7
15
53
1.67
10778--10811
16
2.1
16
88
5
50
26
8
0
64
1.22
10957--11039
28
2.8
29
83
10
107
30
7
27
34
1.84
14402--14443
21
2.0
21
95
0
75
45
4
28
21
1.72
15682--15729
24
2.0
24
100
0
96
16
20
12
50
1.78
17235--17277
21
2.0
21
90
0
68
44
34
20
0
1.52
17291--17356
21
3.2
20
74
16
64
54
3
0
42
1.15
17413--17461
21
2.3
20
73
10
53
32
32
14
20
1.92
26028--26084
21
2.9
19
86
5
78
33
21
10
35
1.87
49327--49369
22
2.0
22
95
0
77
32
18
34
13
1.90
50385--50458
33
2.2
33
80
0
85
20
32
32
14
1.93
50553--50589
19
1.9
19
88
0
56
59
2
0
37
1.12
66782--66808
6
4.5
6
100
0
54
18
33
18
29
1.95
74161--74258
48
2.0
48
98
0
187
40
11
10
37
1.75
75286--75320
1
35.0
1
94
0
61
2
0
0
97
0.19
81629--81690
31
2.0
30
87
9
90
61
16
4
17
1.51
83181--83242
31
2.0
30
87
9
90
61
16
4
17
1.51
84763--84852
45
2.0
45
97
0
171
22
34
22
21
1.97
84799--84930
67
2.0
67
100
0
264
24
36
21
17
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84999--85042
14
3.1
14
77
9
54
47
4
9
38
1.56
84999--85043
15
3.1
15
75
12
58
48
4
8
37
1.55
100587--100621
2
17.5
2
88
11
54
51
0
2
45
1.16
101934--102094
31
5.2
31
82
3
189
16
24
26
32
1.96
101925--102094
62
2.7
62
85
0
223
17
25
25
31
1.97
101982--102110
62
2.1
61
81
5
143
17
24
28
29
1.97
115742--115829
32
2.8
32
100
0
176
15
11
15
56
1.66
124591--124625
5
6.8
5
87
6
52
0
37
57
5
1.23
126106--126131
11
2.4
11
100
0
52
0
26
57
15
1.38
131909--131942
14
2.3
15
90
5
52
58
0
14
26
1.36
133812--133838
14
1.9
14
100
0
54
81
0
3
14
0.82
134129--134164
7
5.1
7
93
0
63
38
16
44
0
1.48
146439--146492
27
2.0
27
96
0
99
40
16
22
20
1.91

Tables:   1

The End!