Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020730.1 Corchorus olitorius cultivar O-4 contig20763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29820

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4504--4542
5
7.8
5
94
0
60
0
33
5
61
1.18
5845--5902
21
2.9
19
84
5
71
31
22
10
36
1.88
14633--14755
61
2.0
61
100
0
246
33
17
16
32
1.93
16536--16569
17
2.0
17
100
0
68
11
11
41
35
1.78
22609--22641
2
16.5
2
100
0
66
48
0
0
51
1.00
22972--23092
59
2.1
59
100
0
242
30
16
11
41
1.84
23445--23504
30
2.0
30
87
6
86
11
23
13
51
1.73
26371--26430
30
2.0
30
93
0
102
13
23
10
53
1.69
26510--26551
21
2.0
21
95
0
75
54
19
9
16
1.69
27133--27176
23
1.9
23
81
9
54
59
0
11
29
1.32
28894--28939
3
15.7
3
95
4
85
65
0
0
34
0.93
29067--29106
2
20.0
2
100
0
80
50
0
0
50
1.00
29690--29724
11
3.2
11
91
0
61
0
2
17
80
0.84

Tables:   1

The End!