Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020733.1 Corchorus olitorius cultivar O-4 contig20766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56860

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1317--1342
3
8.7
3
100
0
52
30
0
0
69
0.89
3529--3594
33
2.0
33
87
0
96
18
21
15
45
1.85
5180--5256
26
3.0
25
75
19
79
36
28
1
33
1.66
5478--5597
21
5.9
21
85
6
167
30
26
27
15
1.95
5883--5981
21
5.0
21
68
16
59
34
25
28
12
1.92
6056--6108
24
2.2
24
96
0
97
5
18
3
71
1.21
6472--6525
10
5.1
10
76
12
54
61
3
7
27
1.40
6484--6535
23
2.3
23
93
0
86
63
5
5
25
1.39
7337--7442
30
3.5
30
100
0
212
32
27
9
31
1.88
8285--8349
33
2.0
33
90
0
103
20
21
13
44
1.86
10500--10563
32
2.0
32
84
9
85
54
18
7
18
1.67
28753--28784
15
2.1
15
100
0
64
40
21
12
25
1.88
33991--34042
21
2.5
21
84
3
61
23
3
5
67
1.29
34500--34548
22
2.2
22
88
0
71
20
28
6
44
1.75
34509--34550
22
1.9
22
100
0
84
19
33
9
38
1.84
46840--46883
22
2.0
22
90
0
70
29
25
2
43
1.67
49106--49146
18
2.3
18
87
4
57
60
7
9
21
1.52

Tables:   1

The End!