Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020736.1 Corchorus olitorius cultivar O-4 contig20769, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106424

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--769
333
2.3
332
89
3
1158
36
17
13
31
1.89
793--907
58
2.0
59
98
1
223
15
26
13
43
1.85
13532--13558
13
2.1
13
100
0
54
0
22
7
70
1.12
14078--14290
89
2.4
90
81
9
231
30
23
13
32
1.93
14609--14924
105
3.0
105
95
0
560
33
19
13
32
1.91
27831--27892
29
2.1
29
85
5
81
20
22
11
45
1.83
31422--31454
14
2.3
15
89
5
50
78
0
0
21
0.75
38437--38480
22
2.0
22
86
8
63
13
40
2
43
1.57
39912--39975
31
2.1
31
100
0
128
25
6
20
48
1.72
65862--66045
92
2.0
92
98
0
359
40
19
9
30
1.83
79059--79104
22
2.1
22
95
0
83
23
17
34
23
1.96
79233--79324
43
2.1
43
97
0
175
28
21
22
27
1.99
82813--82997
88
2.1
88
93
2
318
29
26
24
19
1.98
95738--95871
68
2.0
65
88
4
196
41
15
24
17
1.89
95740--95879
65
2.1
66
86
4
192
41
16
23
18
1.90
99287--99332
20
2.3
20
96
0
83
17
28
15
39
1.90
101652--101734
2
42.0
2
80
11
91
46
1
3
48
1.27
105004--105030
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!