Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020741.1 Corchorus olitorius cultivar O-4 contig20774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44173
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Found at i:14284 original size:5 final size:5
Alignment explanation
Indices: 14258--14308 Score: 72
Period size: 5 Copynumber: 10.8 Consensus size: 5
14248 TTATTAATTT
*
14258 TTATC TTA-C -TATC TTATT TTATC TTATC TTATC TTATC TTATC TTA-C
1 TTATC TTATC TTATC TTATC TTATC TTATC TTATC TTATC TTATC TTATC
14305 TTAT
1 TTAT
14309 AAAATTACGA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
3 2 0.05
4 6 0.15
5 33 0.80
ACGTcount: A:0.22, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATC
Found at i:15506 original size:322 final size:325
Alignment explanation
Indices: 14914--15585 Score: 944
Period size: 322 Copynumber: 2.1 Consensus size: 325
14904 TTTAGCACTG
* ** * *
14914 GCTCAGTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATC
1 GCTCAGTTTTGCATGATTTTTGGCCCAAAGACTCCTTGAAATATCTATATTCATCAAACAAAATC
* * *
14979 CCAGCCACGTTCGATTTAAGTATTTGTTTTTACAAGGCATCTGAATCTTGTTTCAATTTAATTAA
66 CCAGCCACATTCGATATAAGGATTTGTTTTTACAAGGCATCTGAATCTTGTTTCAATTTAATTAA
* * * *
15044 AAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGG
131 AAATTAATTCAGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATCTTTCTGG
* * **
15109 CGTTGAATTATATATTTTTTCTGAGTATTGTGACAAAAAATTGAGAAAAAACCTTTCCGATCAGT
196 CGTTGAATTATATATTTTTTCTGAGAATTGTGACAAAAAATTAAGAAAAAACAATTCCGATCAGT
15174 TTTTAGCCGAAAA-CGTGTACTAACCATCACGGTTTTT-GGCTAAAAACGCGTTCCCGA-GCCCC
261 TTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTT-CCGAGGCCCC
15236 -
325 A
* *
15236 GACTCAATTTTGCATGATTTTTGGCCCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAAT
1 G-CTCAGTTTTGCATGATTTTTGGCCCAAAGACTCCTTGAAATATCTATATTCATCAAACAAAAT
** * * * *
15301 GTCAGCCACATTGGATATAAGGATTTGTTTTTACGA-GCATTTGAATCTTG-TTCGATTTAATTA
65 CCCAGCCACATTCGATATAAGGATTTGTTTTTACAAGGCATCTGAATCTTGTTTCAATTTAATTA
* * *
15364 GAAATTAATTCGGAAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTCT
130 AAAATTAATTCAGAAAAAAA-TGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATCTTTCT
* * * *
15429 GGTGTTGAATTATATATTTTTTCTGAGAATTGTGGCAAAAAATTAAGGAAAAAA-AATTCGGGTC
194 GGCGTTGAATTATATATTTTTTCTGAGAATTGTGACAAAAAATTAA-GAAAAAACAATTCCGATC
* * *
15493 AGTTTTTAGCCGAAAATCGTGTACTAACCTTCATGGTTTTTGGGCTAAAAACGCGTTTCGAGGGC
258 AGTTTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGA-GGC
15558 CCCA
322 CCCA
15562 GCTCAGTTTTGCATGATTTTTGGC
1 GCTCAGTTTTGCATGATTTTTGGC
15586 AGAAAGAGCA
Statistics
Matches: 307, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
321 30 0.10
322 117 0.38
323 117 0.38
324 15 0.05
325 27 0.09
326 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (325 bp):
GCTCAGTTTTGCATGATTTTTGGCCCAAAGACTCCTTGAAATATCTATATTCATCAAACAAAATC
CCAGCCACATTCGATATAAGGATTTGTTTTTACAAGGCATCTGAATCTTGTTTCAATTTAATTAA
AAATTAATTCAGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAGACCATCAATCTTTCTGG
CGTTGAATTATATATTTTTTCTGAGAATTGTGACAAAAAATTAAGAAAAAACAATTCCGATCAGT
TTTTAGCCGAAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGAGGCCCCA
Found at i:15611 original size:130 final size:131
Alignment explanation
Indices: 15463--15724 Score: 418
Period size: 130 Copynumber: 2.0 Consensus size: 131
15453 GAGAATTGTG
* * *
15463 GCAAAAAATTAAGGAAAAAAAATTCGGGTCAGTTTTTAGCCGAAAATCGTGTACTAACCTTCATG
1 GCAAAAAATTAAGAAAAAAAAATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
15528 GTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCAGCTCAGTTTTGCATGA-TTTTTGGCAGAAAG
66 GTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCAGCTCAGTTTTGCATGATTTTTTGGCAGAAAG
15592 A
131 A
* *
15593 GCAAAAAATTCAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
1 GCAAAAAATTAAGAAAAAAAAATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
* * * * *
15658 GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTATTTTTTTGGCAGAAA
66 GTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCAGCTCAGTTTTGCATGA-TTTTTTGGCAGAAA
15723 GA
130 GA
15725 CTCCTTGAAA
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
130 105 0.88
132 15 0.12
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (131 bp):
GCAAAAAATTAAGAAAAAAAAATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
GTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCAGCTCAGTTTTGCATGATTTTTTGGCAGAAAG
A
Found at i:16268 original size:328 final size:328
Alignment explanation
Indices: 15593--16295 Score: 1315
Period size: 326 Copynumber: 2.2 Consensus size: 328
15583 GGCAGAAAGA
*
15593 GCAAAAAATTCAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
1 GCAAAAAATTAAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
15658 GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTATTTTTTTGGCAGAAA
66 GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTATTTTTTTGGCAGAAA
15723 GACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACGTTGGATATAAGGATTTGTTT
131 GACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACGTTGGATATAAGGATTTGTTT
*
15788 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAATTGGAAAAATGA
196 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATTGGAAAAATGA
*
15853 TATTAAATGCGTGAAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGATTATT
261 TATTAAATGCGTGAAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATT
15918 GTC
326 GTC
15921 GCAAAAAATTAAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
1 GCAAAAAATTAAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
15986 GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTA-TTTTTTGGCAGAAA
66 GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTATTTTTTTGGCAGAAA
16050 GACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACGTTGG-TATAAGGATTTGTTT
131 GACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACGTTGGATATAAGGATTTGTTT
16114 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATTGGAAAAATGA
196 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATTGGAAAAATGA
*
16179 TATTAAATGCGTGAAAAAGGCCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATT
261 TATTAAATGCGTGAAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATT
*
16244 GTG
326 GTC
* *
16247 GCAAAAAATTAAGAAAAAAA-A-ACGGGTCAGATTTTAGCCGAAAATCGTG
1 GCAAAAAATTAAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTG
16296 TAAACGCATT
Statistics
Matches: 368, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
324 26 0.07
325 1 0.00
326 164 0.45
327 63 0.17
328 114 0.31
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (328 bp):
GCAAAAAATTAAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
GTTTTTGGGCTAAAAACGCGTTTTGGGGGCTCCGGCTCAGTTTTGCATTATTTTTTTGGCAGAAA
GACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACGTTGGATATAAGGATTTGTTT
TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATTGGAAAAATGA
TATTAAATGCGTGAAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATT
GTC
Found at i:17074 original size:315 final size:316
Alignment explanation
Indices: 16560--17369 Score: 921
Period size: 315 Copynumber: 2.5 Consensus size: 316
16550 TTTTTTTTGT
* * * * *
16560 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
1 TTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * * * * *
16625 AC-GTACGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTATCAATTTAATTAAAAATT
65 ACATTA-GATTTAAGGATTTGTTTTTACGA-GCATCTGAATATTGTTTCGATTTAATTAGAAGTT
* * * * *
16689 AATTCGGAAGAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTATGGCATTG
128 AATTCGGAA-AAAATGGAAAAATGATATTAAAAGCATGAAAAGACCATAAATCTTTATGGCATTG
* ** *
16754 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT-GAGAAAAAACTTTGCCGATCAGTTTTT
192 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAAGAAAAAA-AATG-CGATCAGATTTT
* *
16818 AGCCG-AAATCGTG-CATCACGATTTTT-GGCTAAAAACGC-GTTCCCGAGCCCCGACTTAA
255 AGCCGAAAATCGTGACATCACGATTTTTGGGCTAAAAACGCAGTTCACGAGCCCCGACTCAA
*
16876 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * * * *
16941 ACATTGGATATACGGATTCGTTTTTACGAGAATCTGAATTTTGTTTCGATTTAATTAGAAGTTAA
65 ACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAGTTAA
** * **
17006 TTCGGAAAAAATTGGAAAAATGATATTAAAAGTGTGAAAAGACCATAAATCTTTTTGGTGTTGAA
130 TTCGGAAAAAA-TGGAAAAATGATATTAAAAGCATGAAAAGACCATAAATCTTTATGGCATTGAA
* *
17071 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAAGAAAAAAAATGGGGTCAGATTTTAGCC
194 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAAGAAAAAAAATGCGATCAGATTTTAGCC
* * * * * * * *
17136 GAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAACAACGCATTTCAGGGGCCCCGGCTCAG
259 GAAAATCGTG-----A-CATCACGATTTTTGGGCTAAAAACGCAGTTCACGAGCCCCGACTCAA
*
17200 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTTAGGCT
1 TTTTGCATGATTTTTGGC-GAAAGACTCCTTGAAATATCTATATTCATCAAACCAA----A---T
17265 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAG
58 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAG
* * * *
17330 AAGTAAATTCAGAAAAAAATAGAAAAATGATATTTAAAGC
123 AAGTTAATTC-GGAAAAAATGGAAAAATGATATTAAAAGC
17370 GAGAAAATAT
Statistics
Matches: 414, Mismatches: 58, Indels: 29
0.83 0.12 0.06
Matches are distributed among these distances:
314 18 0.04
315 125 0.30
316 87 0.21
317 1 0.00
322 11 0.03
323 11 0.03
324 66 0.16
325 1 0.00
328 1 0.00
331 86 0.21
332 7 0.02
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (316 bp):
TTTTGCATGATTTTTGGCGAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCA
CATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAGTTAAT
TCGGAAAAAATGGAAAAATGATATTAAAAGCATGAAAAGACCATAAATCTTTATGGCATTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAAGAAAAAAAATGCGATCAGATTTTAGCCGA
AAATCGTGACATCACGATTTTTGGGCTAAAAACGCAGTTCACGAGCCCCGACTCAA
Found at i:17325 original size:876 final size:870
Alignment explanation
Indices: 16297--18246 Score: 3182
Period size: 876 Copynumber: 2.2 Consensus size: 870
16287 AAAATCGTGT
* *
16297 AAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGTCAGAAAGACTCCTTCAAATAT
1 AAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATAT
**
16362 CTATATTCATCTAATTAATCTAAGGGTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGC
66 CTATATTCATCTAACCAATCT-A-GGTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGC
* *
16427 ATCTGAATATTGTTTTGATTTAATTAGAAATAAATTCGGAAAAAAATAGAAAAATGATATTTAAA
129 ATCTGAATATTGTTTCGATTTAATTAGAAGTAAATTCGGAAAAAAATAGAAAAATGATATTTAAA
16492 GCGAGAAAAATATTTCAA-TTTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTT
194 GCGAGAAAAATATTTCAATTTTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATA-TTTTT
16556 TTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCC
258 TTGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCC
16621 AGCCACGTACGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTATCAATTTAATTAAAA
323 AGCCACGTACGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTATCAATTTAATTAAAA
16686 ATTAATTCGGAAGAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTATGGCA
388 ATTAATTCGGAAGAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTATGGCA
* *
16751 TTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTGCCGATCAGTTT
453 TTGAATTATATATTTCTTCTGAGTATTGTGGCAAAAAATGGAGAAAAAACTTTGCCGATCAGTTT
*
16816 TTAGCCGAAATCGTG-CATCACGATTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTTAATTTT
518 TTAGCC--AATCGTGACATCACGATTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTT
16880 GCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACAT
581 GCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACAT
* * *
16945 TGGATATACGGATTCGTTTTTACGAGAATCTGAATTTTGTTTCGATTTAATTAGAAGTTAATTCG
646 TGGATATAAGGATTCGTTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCG
*
17010 G-AAAAAATTGGAAAAATGATATTAAAAGTGTGAAAAGACCATAAATCTTTTTGGTGTTGAATTA
711 GAAAAAAATTGG-AAAATGATATTAAAAGCGTGAAAAGACCATAAATCTTTTTGGTGTTGAATTA
*
17074 TATATTTTTTCTGAGTATTGTGGCAAAAAATTCAAGAAAAAAAATGGGGTCAGATTTTAGCCGAA
775 TATATTTTTTCTGAGTATTGTGGCAAAAAATTC-AG-AAAAAAATAGGGTCAGATTTTAGCCGAA
*
17139 AATCGTGTACTAACCATCATGGTTTTTGGGCTAA
838 AATCATGTACTAACCATCATGGTTTTT-GGCTAA
*
17173 CAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATAT
1 AAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATAT
17238 CTATATTCATCTAACCAATCTTAGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGC
66 CTATATTCATCTAACCAATC-TAGG-TCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGC
*
17303 ATCTGAATATTGTTTCGATTTAATTAGAAGTAAATTCAGAAAAAAATAGAAAAATGATATTTAAA
129 ATCTGAATATTGTTTCGATTTAATTAGAAGTAAATTCGGAAAAAAATAGAAAAATGATATTTAAA
17368 GCGAG-AAAATATTTCAATTTTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTT
194 GCGAGAAAAATATTTCAATTTTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTT
17432 TGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCA
259 TGTTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCA
* *
17497 GCCACGTTCGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTTTCAATTTAATTAAAAA
324 GCCACGTACGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTATCAATTTAATTAAAAA
* *
17562 TTAATTCGGAAGAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTATGGCGT
389 TTAATTCGGAAGAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTATGGCAT
17627 TGAATTATATATTTCTTCTGAGTATTGTGGCAAAAAATGGAGAAAAAACTTTGCCGATCAGTTTT
454 TGAATTATATATTTCTTCTGAGTATTGTGGCAAAAAATGGAGAAAAAACTTTGCCGATCAGTTTT
* *
17692 TAGCCAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAAT
519 TAGCCAATCGTG-----A-CATCACGATTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAAT
17757 TTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCA
578 TTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCA
* * *
17822 CATTGGATATAAGGATTTGTTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
643 CATTGGATATAAGGATTCGTTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
*
17887 TCGGAAAAAAATTGGAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
708 TCGGAAAAAAATTGGAAAATGATATTAAAAGCGTGAAAAGACCATAAATCTTTTTGGTGTTGAAT
* *
17952 TATGTATTTTTTCTTAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGAA
773 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGAA
18017 AATCATGTACTAACCATCATGGTTTTTGGCTAA
838 AATCATGTACTAACCATCATGGTTTTTGGCTAA
* ** * * * * *
18050 AAACGC-GTTCCCGAGCCCCGACTTAATTTTGCATGATTTTTGGCAAAAAGACTCCTTGAAATAT
1 AAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATAT
** * * * * * * * * *
18114 AGATATTCATCAAACCAA---A--TGTCAGTCACATTGGGTATAAGGATTTGTTTTTATGCGCAC
66 CTATATTCATCTAACCAATCTAGGTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCAT
* * * * *
18174 CTGAATCTTGTTTCGATTTAATTAGAAGTTAATTCGGAAAAAAATTGGAAAATTGATATTAAAAG
131 CTGAATATTGTTTCGATTTAATTAGAAGTAAATTCGGAAAAAAA-TAGAAAAATGATATTTAAAG
*
18239 CGTGAAAA
195 CGAGAAAA
18247 GACCATCAAT
Statistics
Matches: 1005, Mismatches: 56, Indels: 31
0.92 0.05 0.03
Matches are distributed among these distances:
869 74 0.07
870 20 0.02
871 3 0.00
872 1 0.00
873 7 0.01
875 279 0.28
876 292 0.29
877 12 0.01
878 53 0.05
879 2 0.00
880 252 0.25
881 10 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (870 bp):
AAACGCATTTCAGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATAT
CTATATTCATCTAACCAATCTAGGTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCAT
CTGAATATTGTTTCGATTTAATTAGAAGTAAATTCGGAAAAAAATAGAAAAATGATATTTAAAGC
GAGAAAAATATTTCAATTTTTTTTTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTTTG
TTTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGC
CACGTACGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTATCAATTTAATTAAAAATT
AATTCGGAAGAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTATGGCATTG
AATTATATATTTCTTCTGAGTATTGTGGCAAAAAATGGAGAAAAAACTTTGCCGATCAGTTTTTA
GCCAATCGTGACATCACGATTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGCATG
ATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCCACATTGGAT
ATAAGGATTCGTTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAA
AAATTGGAAAATGATATTAAAAGCGTGAAAAGACCATAAATCTTTTTGGTGTTGAATTATATATT
TTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGAAAATCATGT
ACTAACCATCATGGTTTTTGGCTAA
Found at i:18028 original size:320 final size:318
Alignment explanation
Indices: 17435--18568 Score: 1490
Period size: 320 Copynumber: 3.5 Consensus size: 318
17425 ATTTTTTTGT
* * * * *
17435 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
1 TTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * * * *
17500 ACGTTCGATTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTTTCAATTTAATTAAAAATTA
65 ACATTGGATATAAGGATTTGTTTTTACGA-GCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* * * * * * *
17565 ATTCGGAAGAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTATGGCGTTGA
129 ATTCGGAAAAAAATGG-AAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
* ** * * * *
17630 ATTATATATTTCTTCTGAGTATTGTGGCAAAAAATGGAGAAAAAACTTTGCCGATCAGTTTTTAG
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAA-ATAG--GGTCAGATTTTAG
17695 CC---AATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
255 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
*
17756 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
*
17821 ACATTGGATATAAGGATTTGTTTTTATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
65 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
17886 TTCGGAAAAAAATTGGAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAA
130 TTCGGAAAAAAA-TGGAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAA
* *
17951 TTATGTATTTTTTCTTAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGA
194 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGA
* *
18016 AAATCATGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTTAA
259 AAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
* ** * *
18076 TTTTGCATGATTTTTGGCAAAAAGACTCCTTGAAATATAGATATTCATCAAACCAAATGTCAGTC
1 TTTTGCATGATTTTTGGC-GAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * * *
18141 ACATTGGGTATAAGGATTTGTTTTTATGCGCACCTGAATCTTGTTTCGATTTAATTAGAAGTTAA
65 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
18206 TTCGGAAAAAAATTGGAAAATTGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
130 TTCGGAAAAAAA-TGGAAAA-TGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
*
18271 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAAATCGGGTCAGATTTTA
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG----AAAAAAATAGGGTCAGATTTTA
* * ** *
18336 GCCGAAAATGGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGTGTTTCGGGGGCCCCTG-CT
254 GCCGAAAATCGTGTACTAACCATCATGGTTTTT-GGCTAAAAACGCG-TTCCCGAGCCCC-GACT
*
18400 CAG
316 CAA
*
18403 TTTTGCATGATTTTTGGCAGAAAGACT-C--GAAATATCTATATTCATCTAACCAATCTCAGGCT
1 TTTTGCATGATTTTTGGC-GAAAGACTCCTTGAAATATCTATATTCATCAAACCAA----A---T
* *
18465 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
58 CTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * *
18530 AAATAAATTCGGAAAAAAATAGATAAATGATATTTAAAG
123 AAATTAATTCGGAAAAAAATGGA-AAATGATATTAAAAG
18569 TGAGAAAAAT
Statistics
Matches: 725, Mismatches: 67, Indels: 33
0.88 0.08 0.04
Matches are distributed among these distances:
317 13 0.02
319 2 0.00
320 325 0.45
321 166 0.23
324 22 0.03
325 52 0.07
326 13 0.02
327 38 0.05
328 2 0.00
330 14 0.02
331 78 0.11
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (318 bp):
TTTTGCATGATTTTTGGCGAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCA
CATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
TCGGAAAAAAATGGAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAATAGGGTCAGATTTTAGCCGAAA
ATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
Found at i:19406 original size:129 final size:129
Alignment explanation
Indices: 19169--19426 Score: 387
Period size: 129 Copynumber: 2.0 Consensus size: 129
19159 TAGTATTGTG
* * *
19169 GCAAAAATTTCAGGAAAAAAAATTCGGGTCAGTTTTTAGCCAAAAATCGTGTACTAACCATCGTG
1 GCAAAAAATTCAGGAAAAAAAATTCGGGTCAGTTTTTAGCCAAAAATCGTGAACTAACCATCATG
* * *
19234 GTTTTTGGTCTAAAAACGCGTTTCGGGTGCCCCGGCTCATTTTGCATGATTTTTGGCAGAAAGA
66 GTTTTTGGGCTAAAAACGCGTTTAGGGTGCCCCGGCTCATTTTGCATGATTTCTGGCAGAAAGA
* *
19298 GCAAAAAATTCA-GAAATAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCAT
1 GCAAAAAATTCAGGAAA-AAAAATTCGGGTCAGTTTTTAGCCAAAAATCGTGAACTAACCATCAT
*
19362 GGTTTTTGGGCT-AAAACGCATTTTAGGG-GCCCCGGCTCAGTTTTGCATGATTTCTGGCAGAAA
65 GGTTTTTGGGCTAAAAACGC-GTTTAGGGTGCCCCGGCTCA-TTTTGCATGATTTCTGGCAGAAA
19425 GA
128 GA
19427 CTCCTTGAAA
Statistics
Matches: 117, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
128 22 0.19
129 95 0.81
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (129 bp):
GCAAAAAATTCAGGAAAAAAAATTCGGGTCAGTTTTTAGCCAAAAATCGTGAACTAACCATCATG
GTTTTTGGGCTAAAAACGCGTTTAGGGTGCCCCGGCTCATTTTGCATGATTTCTGGCAGAAAGA
Found at i:20326 original size:130 final size:131
Alignment explanation
Indices: 20178--20438 Score: 409
Period size: 131 Copynumber: 2.0 Consensus size: 131
20168 GAGTATTGTG
* *
20178 GCAAAAAATTCAGGAAAAAAA-GTTCGAGTCAGTTTTTAGCCGAAAATCGTGTACTAACCATCAT
1 GCAAAAAATTCA-GAAAAAAATATTCGAGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCAT
* *
20242 GG-TTTTTGGGTTAAAAACGTGTTTCGAGGGCCCCGGCACAGTTTTGCATGATTTTTGGCAAAAA
65 GGTTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCGGCACAGTTTTGCATGATTTTTGGCAAAAA
20306 GA
130 GA
* *
20308 GCAAAAATTTCAGAAAAAAATATTCGGGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
1 GCAAAAAATTCAGAAAAAAATATTCGAGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
* * * *
20373 GTTTTTTGGGCTAAAAACGCGTTTTGGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAG
66 GTTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCGGCACAGTTTTGCATGATTTTTGGCAAAAAG
20438 A
131 A
20439 CTCCTTGAAA
Statistics
Matches: 119, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 8 0.07
130 53 0.45
131 58 0.49
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (131 bp):
GCAAAAAATTCAGAAAAAAATATTCGAGTCAGTTTTTAGCCGAAAATCGTGAACTAACCATCATG
GTTTTTTGGGCTAAAAACGCGTTTCGAGGGCCCCGGCACAGTTTTGCATGATTTTTGGCAAAAAG
A
Found at i:21497 original size:333 final size:323
Alignment explanation
Indices: 20645--21509 Score: 952
Period size: 323 Copynumber: 2.6 Consensus size: 323
20635 TATTTTTTGT
* * * *
20645 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACACAA-T---CC-
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAAC-CAATTCGGCCT
* ** * * *
20705 CAGCCACGTTCGATTTAAGTTTTTGTTTTTACGAGCATCTGAATCTAGTTTCAATTTAATTAAAA
65 CAGCCAC-TTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * * * *
20770 ATTAAA-TCAGAAAAATAATGGGAAAACGATA-TTAGAAGCGTGAAAAGCCCGTCAATCTTTTTC
129 A-TAAATTCGGAAAAA-AATGGAAAAATGATATTTA-AAGCGAGAAAA--ACATCAATCTTTTTC
* ***
20833 GCGTTGAATTATATATTTTTTCTGAGTATTGGGGCAAAAATTTGAGAAATAACTTTTCCGATCAG
189 GCGTTGAATTATATATTTTTTCTGAGTATTGGGGCAAAAATTTCAGAAATAAAAATTCCGATCAG
*
20898 TTTTTAGCCGAAATCGTGTACTAACCACCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCTGA
254 TTTTTAGCCGAAATCGTGTACTAACCACCACGGTTTTTGGCTAAAAACGCGTTCACGAGCCCTGA
20963 CTCAA
319 CTCAA
*
20968 TTTTGCTTGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATGTCGGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACC-AAT-TCGGCC
* *
21033 TC-G----TTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
64 TCAGCCACTTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
21093 ATTAATTCGGAAAAAAATTGGAAAAATGATATTAAAAGC-ATGAAAAGACCATCAATCTTTTTGG
129 ATAAATTCGGAAAAAAA-TGGAAAAATGATATTTAAAGCGA-GAAAA-A-CATCAATCTTTTTCG
* * * * *
21157 TGTTGAATTATATATTTTTTCTTAGTATTGTGGCAAAAATTTCAGGAAA-AAAAATTCGGGTCAG
190 CGTTGAATTATATATTTTTTCTGAGTATTGGGGCAAAAATTTCA-GAAATAAAAATTCCGATCAG
* * * *
21221 TTTTTAGCCGAAAATCGTGTACTAACCATCATGGTTTTTGGTCTAAAAACGCGTTTCAGGGGCGC
254 TTTTTAGCCG-AAATCGTGTACTAACCACCACGGTTTTTGG-CTAAAAACGCG-TTCACGAGC-C
* *
21286 C-GGCTCAG
315 CTGACTCAA
* *
21294 TTTTGCATGATCTTTGGCAG-AAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGC
1 TTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATATTCATCAAACCAAT-TC-GGC
* *
21358 TCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTAAATATTGTTTCGATTTAATTA
63 -CTCAGCCAC-TTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * *
21423 GAAATAAATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTT
126 GAAATAAATTCGGAAAAAAATGGAAAAATGATATTTAAAGCGAGAAAAACA--TCAA-TCTTTTT
* * *
21488 TGCGTTGAATTGTGTATTTTTT
188 CGCGTTGAATTATATATTTTTT
21510 GCCGAAAATA
Statistics
Matches: 457, Mismatches: 55, Indels: 50
0.81 0.10 0.09
Matches are distributed among these distances:
322 6 0.01
323 202 0.44
324 34 0.07
325 17 0.04
326 63 0.14
327 6 0.01
328 4 0.01
329 1 0.00
330 1 0.00
331 1 0.00
332 28 0.06
333 94 0.21
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (323 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAACCAATTCGGCCTC
AGCCACTTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
AAATTCGGAAAAAAATGGAAAAATGATATTTAAAGCGAGAAAAACATCAATCTTTTTCGCGTTGA
ATTATATATTTTTTCTGAGTATTGGGGCAAAAATTTCAGAAATAAAAATTCCGATCAGTTTTTAG
CCGAAATCGTGTACTAACCACCACGGTTTTTGGCTAAAAACGCGTTCACGAGCCCTGACTCAA
Found at i:25907 original size:330 final size:329
Alignment explanation
Indices: 24571--27867 Score: 2717
Period size: 330 Copynumber: 10.0 Consensus size: 329
24561 AATGTGACTA
* ** * *
24571 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCAGATCCCGGAACGCGTTT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCGAAACACGTTT
** ** * *
24636 TTAGCTGAAAACTATGAAGGTTAGT--AC-A---C-G-----ATTTTGTAAAAATTGACCCGAAA
66 TTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAA
* * *
24689 GATTTTTCCTCGATTTTT-AGTAAAAATAATCATAAACAAA-ATAT-ATTCAACGCCAAAAAGAT
131 GATTTTTCCTCAATTTTTGACT-AAAATACTCATAAA-AAATATATAATTCAACGCCAAAAAGAT
* * * * *
24751 TGAAGGGCTTTTCACGCTTCAAATATCGTTTTTTCCTATTTTATTTCCAAATTAATTTCTGATTA
194 TGAAGGACTTTTCACGCTT-TAATATCG-TTTTT-C-ATATT-TTTCTAAATTAATTTCTAATTA
* ** * * * *
24816 AATCGAAACAAGATTTAGAAACTCGTATAAACAAATCCTTAAATACAATGTGGTTGAGATTTGGT
254 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGAT
24881 TAGATGAATAT
319 TAGATGAATAT
** * * * * * * *
24892 AGATATATTTTA--AGT-TT-GCGCCAAAAATCATTCAAAACTAACCCAGGGCTCCGGAACGCGT
1 AGATAT-TTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC-CCGAAACACGT
** * * *
24953 TTTTAGCAAAAAA-AATCAT-GATGGTACACGATTTCGGCTAAAATTTTGC-AAAATTGACCCGA
64 TTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGA
* ** * * **
25015 AATAATTTTT--AAAATTTTT-AGCCACAATACTTGTACAAAAATATATAATTCAACGCCAAAAA
129 AA-GATTTTTCCTCAATTTTTGA-CTAAAATACTCATA-AAAAATATATAATTCAACGCCAAAAA
* * *
25077 AATTGAAGGACTTCTCACGCTTCTAATATCGTTTTTCTTTATCTTTT-TCAAATTAATTTCTAAT
191 GATTGAAGGACTTTTCACGCTT-TAATATCGTTTTTC-ATAT-TTTTCT-AAATTAATTTCTAAT
** * * * *
25141 TAAATTAAAACATGATTCAAATGCTCGTAAAAACAAATCCTTTAATCCAATGTGGCTAAGATTTG
252 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTG
25206 -TTCAGATGAATAT
317 ATT-AGATGAATAT
* * * * * * **
25219 AGATATTTCAAGGAGTTTTGACACCAAATATCATG-AAAACTGA-CCCGGACCCGGAACATATTT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCGAAACACGTTT
* *
25282 TTAGCCAAAAAAAACCGTGATGG--A--ATATGATTTCGGCTAAAATTTTGCAAAAATTGA-CCG
66 TTAG-C--AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCG
* * * *
25342 AAA-ATATTTTCCCTCAATTTTT-AGCCAAAATACTCATAAAATATATATAATTTAATGCCAAAA
128 AAAGAT-TTTT-CCTCAATTTTTGA-CTAAAATACTCATAAAAAATATATAATTCAACGCCAAAA
* * * * * *
25405 AGATTGGAGGACTTTTTACGCTTTTAATATCGTTTTTCAAAATTTTCTGAATTAATTTTTAATTA
190 AGATTGAAGGACTTTTCACGC-TTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTA
* * * *
25470 AATCGAAACAAGAATCAAATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGTTGAGATTTGAT
254 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGAT
25535 TAGATGAATAT
319 TAGATGAATAT
* * * * *
25546 AGATATTTCAAGTAGTC-T-CCACGCAAAAAATCACGCAAAACTAAGTCGGGGCCTCGAAACACG
1 AGATATTTCAAGGAGTCTTGGCAC-C-AAAAATCATGCAAAACTGAGCCGGGGCC-CGAAACACG
* * *
25609 TTTTTAGCAAAAAACCGTGGTGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGACCCA
63 TTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCG
** ** * * *
25674 AAATTTTTTTTGTCAATTTTTGACTAAAATACTCATGAAATATATATAATTTAACGCCAAAAAGA
128 AAAGATTTTTCCTCAATTTTTGACTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGA
* * *
25739 TTGGAGGACTTTTCACGCTTTCATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATC
193 TTGAAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATC
* * * * * *
25804 GAAACAAGATTCAGATTCTCGTAAAAACAAATTCTTAAATACAATGTAGCTGATATTTGTTTAGA
258 GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGA
25869 TGAATAT
323 TGAATAT
* * * * ** * *
25876 GGATATCTCAAGGAGTCTTAGCACCAAAAATCATGCAAAACTGACCCGAAGCCCTGGAACGCGTT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCC-GAAACACGTT
** * * * *
25941 TTTAGCCCAAAACCGTTATGATTATTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCGGAA
65 TTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAA
* ** **
26006 AGATATTTCCTCAA-TTTTGGGT-AAATACTCATAAAAAA-ATATAATTCAACGCCAAAACTATT
130 AGATTTTTCCTCAATTTTTGACTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATT
** * * * * * *
26068 GAAGGGTTTTTTACGCTTCTAATATCGTTTTTCCTACTTTTTTTGAATTAGTTTCTAATTAGATC
195 GAAGGACTTTTCACGCTT-TAATATCGTTTTTCATA-TTTTTCTAAATTAATTTCTAATTAAATC
*
26133 G-AACAAGATTTTCTTTCCAGATTTAGATACTCGT-AAAA-AAATCCTTAAGTCCAATGTGGCTG
258 GAAACAAGA------TT-CAGA--T-G---CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
* *
26195 GGATTTGATTAAATGAATAT
310 AGATTTGATTAGATGAATAT
* * * * *
26215 AGATATTTCAAGGAGTCTTGGCGCCAAATATCATGCACAACTGA-CTCGTGGCCCCAGAACACGT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGC-CGGGGCCCGA-AACACGT
* * * * * *
26279 TTTTAGCCAAAAAAAAAACTGTGAT-GTTACT-CA--TTTTCGACTAATATTTTGTAAAAATTGA
64 TTTTAG-C----AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
* * * * * * **
26340 CCCGAAATATTTTTCCTTAATTTCT-AGCCACAATACT-AAAAAAAATATATAATTCAACGCTGA
124 CCCGAAAGATTTTTCCTCAATTTTTGA-CTAAAATACTCATAAAAAATATATAATTCAACGCCAA
* **
26403 AAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTCCGAATTAATTTCTA
188 AAAGATTGAAGGACTTTTCACGCTT-TAATATCGTTTTTCATA--TTTTTCTAAATTAATTTCTA
* * * * * ** *
26468 ATTAAAACGAAACATGATTCAGATGCTTGTAAAATC-AATGACTTGGAT----T-TGG-TTAGA-
250 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CCTTAAATCCAATGTGGCTGAGAT
*
26525 -TGA--ATAT--ATAT
314 TTGATTAGATGAATAT
* * * * * **
26536 ATATATTTCAAGGAGTCTTGGCGCAAAAAATCATTCAAAACTGAACCGGATCCC-AGAACACGTT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCGA-AACACGTT
* * * * * * *
26600 TTTAGCCAAAAAAGCTGCGATGATTATTACACGATTTCGGCTAAAATTTTGTAAAAATTAACACG
65 TTTAG-CAAAAAA-CCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCG
* * * * *
26665 AAAGATTTTTTCTCAATTTTT-AGC-CATATACACAT--AAAA-A-ATAATTCAATGCCAAAAAG
128 AAAGATTTTTCCTCAATTTTTGA-CTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
* * *
26724 ATTGAATGG-CATTTCACGATTTTAATAACG-TTTTCATATTTTT-TAGAATTAATTTCTAATTA
192 ATTGAA-GGACTTTTCACG-CTTTAATATCGTTTTTCATATTTTTCTA-AATTAATTTCTAATTA
* * * * * *
26786 AATCGAAACAAGATTCAGATACTCGTAAAAACACATCTTTAAATGCAATGTGGCTAAGATTTTAT
254 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGAT
26851 TAGATGAATAT
319 TAGATGAATAT
** **
26862 AGATATTTCAAGGAGTGC-TGGCACCAAAAATTGTGCAAAACTGAGCCGGTACCCCGAAACACGT
1 AGATATTTCAAGGAGT-CTTGGCACCAAAAATCATGCAAAACTGAGCCGG-GGCCCGAAACACGT
* * * * * *
26926 TTTTAGCCAAAAAAACGTGATAGTAAGTAGATGATTTTGGCTAAAATTTTGCAAAAAAAATAATA
64 TTTTAG-CAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC-------A-AA-A
* * * * *
26991 ATAATGATCCGAAAAATTTTTCCTCAATTTTTTGA-TAAAATACTCACAAAATATATATAATTTA
119 AT--TGACCCGAAAGATTTTTCCTCAA-TTTTTGACTAAAATACTCATAAAAAATATATAATTCA
* * *
27055 ACGCCAAAAATATTGGAGGACTTTTCACGCTTTCAATATCGGTTTTCATATTTTTCTAAATTAAT
181 ACGCCAAAAAGATTGAAGGACTTTTCACGCTTT-AATATCGTTTTTCATATTTTTCTAAATTAAT
* * * * * *
27120 TTCTAATTAAATCAAAACAAAATTCAGATGCTTGTAGAAACAAATTCTTAAATCTAATGTGGCTG
245 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
27185 AGATTTGATTAGATGAATAT
310 AGATTTGATTAGATGAATAT
* * * * *** * *
27205 GGATATCTCAAGGAGTCTTGGCACAAAAAATCATGTAAAACTGAGCCCACGCCCAGAAA-GCTTT
1 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCC-GAAACACGTT
* ** * * * *
27269 TTTAGCCAAAAACTATGATGGTTATTACACGATTTCGACTAAAATTTTGTAAAAGTTGACCCGAA
65 TTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAA
* * *
27334 AGATATTTCCTCAATTTTTGGCTAAAACACTCATAAAAAATATATAATTCAACGCCAAAAAGATT
130 AGATTTTTCCTCAATTTTTGACTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATT
* * * * * *
27399 GAAGGTCTTTTGACGTTTCTAATATTGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATC
195 GAAGGACTTTTCACGCTT-TAATATCGTTTTTCATA-TTTTTCTAAATTAATTTCTAATTAAATC
* *
27464 GAAACAAGATTCAGATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAA
258 GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGA
27529 TGAATAT
323 TGAATAT
* * * * * * * * *
27536 AGATATTTCAAGTAGTCTCGG-AGCCAAAAATCATACAAAATTAAGCTGGGTCCCCAAAACGCGT
1 AGATATTTCAAGGAGTCTTGGCA-CCAAAAATCATGCAAAACTGAGCCGGG-GCCCGAAACACGT
* * * * *
27600 TTTTAGCTAATAACCCTGATGACTTTGTTAGCACATGATTTCGGCTAAAATTTTGCAAAAATTGA
64 TTTTAGC-AAAAAACC-G-TGA--TGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
* * * *
27665 CACAAAAGATTTATCCTTAATTTTTTGGA-TAAAATACTCAT-AAAAATATATAATTCAACGCCA
124 CCCGAAAGATTTTTCCTCAA-TTTTT-GACTAAAATACTCATAAAAAATATATAATTCAACGCCA
* * * * * * * *
27728 TAAAGATTGGAGGGCTTTTTACGCTTTTTATATCGTATTTCTTATTATTTCTAAATTAATTTATA
187 AAAAGATTGAAGGACTTTTCACGC-TTTAATATCGTTTTTCATATT-TTTCTAAATTAATTTCTA
* * *
27793 AATAAATCGAAACAAGATTCAGATGCTCGTAAAAA-AAATTCTTAAATCCAATCCT-GCTGAGAT
250 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAT-GTGGCTGAGAT
*
27856 TTGGTTAGATGA
314 TTGATTAGATGA
27868 TGTAAAGAAT
Statistics
Matches: 2398, Mismatches: 427, Indels: 287
0.77 0.14 0.09
Matches are distributed among these distances:
314 52 0.02
315 2 0.00
316 14 0.01
317 47 0.02
318 39 0.02
319 35 0.01
320 29 0.01
321 102 0.04
322 6 0.00
323 4 0.00
324 4 0.00
325 6 0.00
326 80 0.03
327 311 0.13
328 115 0.05
329 171 0.07
330 353 0.15
331 234 0.10
332 35 0.01
333 12 0.01
334 6 0.00
335 11 0.00
336 36 0.02
337 176 0.07
338 33 0.01
339 94 0.04
340 48 0.02
341 54 0.02
342 108 0.05
343 164 0.07
344 17 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (329 bp):
AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCGAAACACGTTT
TTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAA
GATTTTTCCTCAATTTTTGACTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTG
AAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAA
ACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
ATAT
Found at i:28377 original size:2 final size:2
Alignment explanation
Indices: 28360--28396 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
28350 TTCGTGATTT
28360 TA TA TA GTA -A TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28397 CTAGTCTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 2 0.06
2 28 0.88
3 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:30594 original size:351 final size:351
Alignment explanation
Indices: 29944--30637 Score: 1010
Period size: 351 Copynumber: 2.0 Consensus size: 351
29934 AAGTCAGATT
* * * * *
29944 TCTTGAAGTCTAAATCTGATATTTTTAGACCCAATTCGTTACTGTGGAAGCCCAAAGAAGGAGTC
1 TCTTGAAATCTAAATCTGATATTCTTAAACCCAATTCGTTAATATGGAAGCCCAAAGAAGGAGTC
* * * *
30009 CAAGTCCAATCAGTAATTATGATGTAGTAATGATTCAGCTCTGATGTAGCATTGTTAAATCATAT
66 CAAGTCCAATCAGTAATTATAATGCAGTAATGATTCAGCCCTGATGCAGCATTGTTAAATCATAT
* * * * * * *
30074 TCGAAGGAGGACTTCACAAGAACATTTTTTGAAGAAAATTCATAATTTTTTATCCGGAACTCAGA
131 TCAAAAGAGGACTTCACAAGAACAGTTTTGGAAGAAAATTCATAACTTTTGATCCAGAACTCAGA
* * * * *
30139 AAAATGCAAATGAGGTACCGTTGGAAAGAGGATTCCAAGGTCTACAACTTTTATGTTTACCTTGA
196 AAAATGCAAATAAGATACCGTTGGAAAGAGGATTCCAAGATCTACAACTTTTATGATTACCTCGA
* * *
30204 GACCTAATTCTGCAATTTTGGTGGACAATTTTACCCTTGAAATTTCTGGACAGAATTGATCTTCT
261 AAACTAATTCTGCAATTCTGGTGGACAATTTTACCCTTGAAATTTCTGGACAGAATTGATCTTCT
*
30269 CCTAAATCGGCTTGGAGAGCCAAATG
326 CCTAAACCGGCTTGGAGAGCCAAATG
* *
30295 TCTTGAAATCTACATCTGATATTCTTAAACCCAATTCGTTAATATGGAAGCTCAAAGAAGGAGTC
1 TCTTGAAATCTAAATCTGATATTCTTAAACCCAATTCGTTAATATGGAAGCCCAAAGAAGGAGTC
* *
30360 CAAGTCCAATCAGTAATTATAATGCAGTAATGATTTAGCCCTGATGCAGCATTGTTAAATCTTAT
66 CAAGTCCAATCAGTAATTATAATGCAGTAATGATTCAGCCCTGATGCAGCATTGTTAAATCATAT
* * *
30425 TCAAAAGAGGACTTCACAAGAGCAGTTTTGGAAGAAAATTCATAACTTTTGATCTAGAGCTCAGA
131 TCAAAAGAGGACTTCACAAGAACAGTTTTGGAAGAAAATTCATAACTTTTGATCCAGAACTCAGA
* * * *
30490 AAATTGCAAATAAGATATCGTTGGAAAGAGGATTTCAATATCTACAACTTTTATGATTACCTCGA
196 AAAATGCAAATAAGATACCGTTGGAAAGAGGATTCCAAGATCTACAACTTTTATGATTACCTCGA
* * * * *
30555 AAATTAATTCTGCAGTTCTGGTGGACGATTTTGCCCTTGAAATTTCTGGACATAATTGATCTTCT
261 AAACTAATTCTGCAATTCTGGTGGACAATTTTACCCTTGAAATTTCTGGACAGAATTGATCTTCT
*
30620 CCTAAACCGTCTTGGAGA
326 CCTAAACCGGCTTGGAGA
30638 ATATTTTGGA
Statistics
Matches: 301, Mismatches: 42, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
351 301 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (351 bp):
TCTTGAAATCTAAATCTGATATTCTTAAACCCAATTCGTTAATATGGAAGCCCAAAGAAGGAGTC
CAAGTCCAATCAGTAATTATAATGCAGTAATGATTCAGCCCTGATGCAGCATTGTTAAATCATAT
TCAAAAGAGGACTTCACAAGAACAGTTTTGGAAGAAAATTCATAACTTTTGATCCAGAACTCAGA
AAAATGCAAATAAGATACCGTTGGAAAGAGGATTCCAAGATCTACAACTTTTATGATTACCTCGA
AAACTAATTCTGCAATTCTGGTGGACAATTTTACCCTTGAAATTTCTGGACAGAATTGATCTTCT
CCTAAACCGGCTTGGAGAGCCAAATG
Found at i:33236 original size:6 final size:6
Alignment explanation
Indices: 33225--33291 Score: 68
Period size: 6 Copynumber: 11.5 Consensus size: 6
33215 TTTTATTTTA
* * *
33225 TTTTCT TTTTC- TTTT-T TTTTCT TTTTCCT CTTCCT TTTCCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT-CT TTTTCT TTTTCT TTTTCT
*
33272 TTTTCT TTTT-T TCTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTT
33292 CCTGGTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
5 12 0.24
6 35 0.69
7 4 0.08
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:33314 original size:42 final size:41
Alignment explanation
Indices: 33227--33319 Score: 116
Period size: 41 Copynumber: 2.2 Consensus size: 41
33217 TTATTTTATT
*
33227 TTCTTTTTCTTTTTTTTTCTTTTTCCTCTTCCTTTTCCTTT
1 TTCTTTTTCTTTTTTTTTCTTTTTCCTCTTCCTTTTCCTTC
* **
33268 TTCTTTTTCTTTTTTTCTTC-TTTTCCTGGTTTTTTTTCCTTC
1 TTCTTTTTCTTTTTTT-TTCTTTTTCCT-CTTCCTTTTCCTTC
*
33310 TTCTTCTTCT
1 TTCTTTTTCT
33320 CCTCATCCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 23 0.51
42 22 0.49
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (41 bp):
TTCTTTTTCTTTTTTTTTCTTTTTCCTCTTCCTTTTCCTTC
Found at i:36867 original size:21 final size:21
Alignment explanation
Indices: 36841--36881 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
36831 CGGTTCCGCG
36841 GGCGCTTCATCTCCTAAATCT
1 GGCGCTTCATCTCCTAAATCT
36862 GGCGCTTCATCTCCTAAATC
1 GGCGCTTCATCTCCTAAATC
36882 CGACATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.32
Consensus pattern (21 bp):
GGCGCTTCATCTCCTAAATCT
Found at i:40445 original size:18 final size:18
Alignment explanation
Indices: 40422--40458 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
40412 GCAGCGGAAA
*
40422 TCCAATCATATATACGTT
1 TCCAATCATAGATACGTT
40440 TCCAATCATAGATACGTT
1 TCCAATCATAGATACGTT
40458 T
1 T
40459 ATTATCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (18 bp):
TCCAATCATAGATACGTT
Found at i:41083 original size:30 final size:30
Alignment explanation
Indices: 41040--41113 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 30
41030 CCGTACAGCT
*
41040 CCCTCTACTTACAAAAAGGGATCAATTTGGTC
1 CCCT-TACTTACAAAAACGG-TCAATTTGGTC
*
41072 CCCTTAC-TACAAAAACTGTCAATTTGGTC
1 CCCTTACTTACAAAAACGGTCAATTTGGTC
*
41101 CCTTTACTTACAA
1 CCCTTACTTACAA
41114 TTTGGTGTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 17 0.45
30 14 0.37
31 3 0.08
32 4 0.11
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (30 bp):
CCCTTACTTACAAAAACGGTCAATTTGGTC
Found at i:41218 original size:12 final size:12
Alignment explanation
Indices: 41203--41235 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
41193 TTTCTGCTTC
41203 TGTTTTTGTTGA
1 TGTTTTTGTTGA
41215 TGTTTTTGTTGA
1 TGTTTTTGTTGA
41227 -GTTTGTTGT
1 TGTTT-TTGT
41236 GAGCTTCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.06, C:0.00, G:0.27, T:0.67
Consensus pattern (12 bp):
TGTTTTTGTTGA
Found at i:41466 original size:29 final size:28
Alignment explanation
Indices: 41362--41458 Score: 97
Period size: 31 Copynumber: 3.2 Consensus size: 28
41352 ATATATAATC
41362 AATTGACAGATTTTGTTAAGTAGAGGGACTC-
1 AATTGACA-A-TTT-TTAAGTAGAGGGAC-CA
* *
41393 AATCGATACTAAATTTTAAGTAGAGGGACCA
1 AATTG--AC-AATTTTTAAGTAGAGGGACCA
41424 AATTGACAATTTTTATAGTAGAGGGACCA
1 AATTGACAATTTTTA-AGTAGAGGGACCA
41453 AATTGA
1 AATTGA
41459 TCCTTTTTTG
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
28 7 0.12
29 21 0.37
30 1 0.02
31 22 0.39
32 2 0.04
33 3 0.05
34 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (28 bp):
AATTGACAATTTTTAAGTAGAGGGACCA
Done.